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Commit 5221683

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author
Atheer Alsayah
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update tests
1 parent fe80ec9 commit 5221683

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docs/notebooks/lrdata_to_Mudata.ipynb

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src/liana/utils/anndata_to_mdata.py

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tests/test_converters.py

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@@ -37,12 +37,4 @@ def zi_minmax_cutoff(x):
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x_transform=neg_to_zero, y_transform=False,
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verbose=False)
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assert_almost_equal(adata.X.max(), 7.760507, decimal=5)
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assert_almost_equal(adata.X.min(), 0, decimal=5)
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def test_adata_to_mdata():
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from scanpy.datasets import pbmc68k_reduced
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adata = pbmc68k_reduced()
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mdata = anndata_to_mdata(adata = adata, groupby = "bulk_labels", min_cells = 0)
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assert mdata.shape == (adata.shape[0], adata.shape[1] * adata.obs["bulk_labels"].nunique())
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assert_almost_equal(adata.X.min(), 0, decimal=5)

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