Thank you for developing mistyR. I am trying to apply it to a Visium HD dataset with 420,000 bins and 18,000 genes. I’ve prepared the intraview, paraview, and juxtaview inputs as specified, but run_misty() has been running for 8 days and is still stuck at the model training stage. I suspect this prolonged runtime could be due to the high number of bins (420,000) in the Visium HD dataset.
Thank you for developing mistyR. I am trying to apply it to a Visium HD dataset with 420,000 bins and 18,000 genes. I’ve prepared the intraview, paraview, and juxtaview inputs as specified, but run_misty() has been running for 8 days and is still stuck at the model training stage. I suspect this prolonged runtime could be due to the high number of bins (420,000) in the Visium HD dataset.