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Which spots are selected by add_juxtaview() and add_paraview() #59

@yanwuanxin

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@yanwuanxin

Q1: add_juxtaview()——how to reasonably set the parameter of neighbor.thr in function add_juxtaview?

Through the following code, my test results show that increasing the value of neighbor.thr has no effect on the selected spots.

For example, in my test data, the threshold value of neighbor.thr is approximately 0.5. When the value of neighbor.thr exceeds 0.5 by a large margin, actualn (I guess actualn is the juxtaview of spot59(cid), which spot marked in red in the picture) remains unchanged.

Based on the above speculation, I think that the value of neighbor.thr should not affect the value of Importance of interaction, however, in actual analysis, this is not the case

Image

Q2 : add_paraview()——how to reasonably set the parameter of l in function add_paraview?

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