protein complex -> complex

Author: jonsch1

pypath/inputs_v2/reactome.py

@@ -72,8 +72,8 @@
     'smallmolecule': EntityTypeCv.SMALL_MOLECULE,
     'protein': EntityTypeCv.PROTEIN,
     'gene': EntityTypeCv.GENE,
-    'complex': EntityTypeCv.PROTEIN_COMPLEX,
-    'complexassembly': EntityTypeCv.PROTEIN_COMPLEX,
+    'complex': EntityTypeCv.COMPLEX,
+    'complexassembly': EntityTypeCv.COMPLEX,
     'dna': EntityTypeCv.DNA,
     'dnaregion': EntityTypeCv.DNA,
     'rna': EntityTypeCv.RNA,

pypath/inputs_v2/signor.py

@@ -94,7 +94,7 @@ def signor_complexes() -> Generator[Entity]:
 
     # Define the schema mapping
     map = EntityBuilder(
-        entity_type=EntityTypeCv.PROTEIN_COMPLEX,
+        entity_type=EntityTypeCv.COMPLEX,
         identifiers=IdentifiersBuilder(
             CV(term=IdentifierNamespaceCv.SIGNOR, value=Column('SIGNOR ID')),
             CV(term=IdentifierNamespaceCv.NAME, value=Column('COMPLEX NAME')),

pypath/internals/cv_terms/entity_types.py

@@ -20,7 +20,7 @@ class EntityTypeCv(CvEnum):
     PROTEIN = "MI:0326"
     GENE = "MI:0250"
     RNA = "MI:0320"
-    PROTEIN_COMPLEX = "MI:0315"
+    COMPLEX = "MI:0314"
     SMALL_MOLECULE = "MI:0328"
     PHENOTYPE = "MI:2261"
     STIMULUS = "MI:2260"