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Description
Describe the bug
error in from pypath.core import network
To Reproduce
Steps to reproduce the behavior:
>>> import pypath
>>> from pypath.core import network
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/biostack/tools/pyvenv/decoupler_1.6.0/lib/python3.11/site-packages/pypath/core/network.py", line 44, in <module>
import pypath.core.interaction as interaction_mod
File "/biostack/tools/pyvenv/decoupler_1.6.0/lib/python3.11/site-packages/pypath/core/interaction.py", line 41, in <module>
import pypath.core.evidence as pypath_evidence
File "/biostack/tools/pyvenv/decoupler_1.6.0/lib/python3.11/site-packages/pypath/core/evidence.py", line 38, in <module>
import pypath.core.entity as entity
File "/biostack/tools/pyvenv/decoupler_1.6.0/lib/python3.11/site-packages/pypath/core/entity.py", line 34, in <module>
import pypath.utils.mapping as mapping
File "/biostack/tools/pyvenv/decoupler_1.6.0/lib/python3.11/site-packages/pypath/utils/__init__.py", line 20, in <module>
from . import orthology as homology
File "/biostack/tools/pyvenv/decoupler_1.6.0/lib/python3.11/site-packages/pypath/utils/orthology.py", line 45, in <module>
import pypath.utils.mapping as mapping
File "/biostack/tools/pyvenv/decoupler_1.6.0/lib/python3.11/site-packages/pypath/utils/mapping.py", line 65, in <module>
import pypath.internals.maps as maps
File "/biostack/tools/pyvenv/decoupler_1.6.0/lib/python3.11/site-packages/pypath/internals/maps.py", line 24, in <module>
import pypath.internals.input_formats as input_formats
File "/biostack/tools/pyvenv/decoupler_1.6.0/lib/python3.11/site-packages/pypath/internals/input_formats.py", line 27, in <module>
import pypath.inputs.uniprot as uniprot_input
File "/biostack/tools/pyvenv/decoupler_1.6.0/lib/python3.11/site-packages/pypath/inputs/uniprot.py", line 41, in <module>
import pypath.utils.taxonomy as taxonomy
File "/biostack/tools/pyvenv/decoupler_1.6.0/lib/python3.11/site-packages/pypath/utils/taxonomy.py", line 85, in <module>
for t in ensembl_input.ensembl_organisms()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/biostack/tools/pyvenv/decoupler_1.6.0/lib/python3.11/site-packages/pypath/inputs/ensembl.py", line 46, in ensembl_organisms
c = curl.Curl(url)
^^^^^^^^^^^^^^
File "/biostack/tools/pyvenv/decoupler_1.6.0/lib/python3.11/site-packages/pypath/share/curl.py", line 937, in __init__
self.curl_setup()
File "/biostack/tools/pyvenv/decoupler_1.6.0/lib/python3.11/site-packages/pypath/share/curl.py", line 1272, in curl_setup
self.curl_init(url = url)
File "/biostack/tools/pyvenv/decoupler_1.6.0/lib/python3.11/site-packages/pypath/share/curl.py", line 1182, in curl_init
self.curl.setopt(self.curl.SSL_ENABLE_ALPN, self.alpn)
^^^^^^^^^^^^^^^^^^^^^^^^^
AttributeError: trying to obtain a non-existing attribute: SSL_ENABLE_ALPN
Expected behavior
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Traceback
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Log file
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This way we can see better exactly at which operation and at
processing of which dataset the error occured.
Desktop (please complete the following information):
- OS: [e.g. Centos]
- Python version: [e.g. 3.11]
- Version or commit hash [e.g. v0.16.10]
Additional context
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