CMake Error: Duplicate Target Names in example/CMakeLists.txt #10
Description
Description:
I encountered a build error when compiling TCHEM inside a Docker container. The issue appears to be related to duplicate target names in example/CMakeLists.txt, causing ADD_EXECUTABLE to fail due to already existing targets.
Environment:
Kokkos Version: v3.7.0
Tines Version: tines-kokkosv4
TCHEM Version: tchem-kokkosv4
Compiler: GCC (default in Docker image)
Build System: CMake
Steps to Reproduce:
Use the following Dockerfile (attached) to build TCHEM.
Run docker build -t tchem-image .
The following error occurs during configuration:
$ docker build -t tchem-image .
[+] Building 57.6s (18/19) docker:default
=> [internal] load build definition from dockerfile 0.0s
=> => transferring dockerfile: 4.59kB 0.0s
=> [internal] load metadata for docker.io/library/ubuntu:20.04 0.8s
=> [internal] load .dockerignore 0.0s
=> => transferring context: 2B 0.0s
=> [ 1/16] FROM docker.io/library/ubuntu:20.04@sha256:8e5c4f0285ecbb4ead070431d29b5 0.0s
=> => resolve docker.io/library/ubuntu:20.04@sha256:8e5c4f0285ecbb4ead070431d29b576 0.0s
=> CACHED [ 2/16] RUN apt-get update && apt-get install -y build-essential cmak 0.0s
=> CACHED [ 3/16] RUN mkdir -p /repos /build /install 0.0s
=> CACHED [ 4/16] WORKDIR /repos 0.0s
=> CACHED [ 5/16] RUN git clone https://github.com/xianyi/OpenBLAS.git /repos/openb 0.0s
=> CACHED [ 6/16] WORKDIR /repos 0.0s
=> [ 7/16] RUN git clone https://github.com/kokkos/kokkos /repos/kokkos && cd 12.3s
=> [ 8/16] WORKDIR /repos 0.0s
=> [ 9/16] RUN git clone https://github.com/google/googletest.git /repos/gtest && 6.4s
=> [10/16] WORKDIR /repos 0.0s
=> [11/16] RUN git clone -b yaml-cpp-0.6.3 https://github.com/jbeder/yaml-cpp.git 27.2s
=> [12/16] WORKDIR /repos 0.0s
=> [13/16] RUN git clone https://github.com/sandialabs/Tines /repos/tines && cd 7.0s
=> [14/16] WORKDIR /repos 0.0s
=> ERROR [15/16] RUN git clone https://github.com/sandialabs/TChem /repos/tchem && 3.6s
------
> [15/16] RUN git clone https://github.com/sandialabs/TChem /repos/tchem && cd /repos/tchem && git checkout tchem-kokkosv4.2 && mkdir /build/tchem && mkdir /install/tchem && cd /build/tchem && cmake -D CMAKE_INSTALL_PREFIX=/install/tchem -D CMAKE_CXX_COMPILER=g++ -D CMAKE_C_COMPILER=gcc -D CMAKE_EXE_LINKER_FLAGS="-lgfortran" -D TCHEM_ENABLE_TEST=ON -D TCHEM_ENABLE_EXAMPLE=ON -D KOKKOS_INSTALL_PATH=/install/kokkos -D TINES_INSTALL_PATH=/install/tines -D GTEST_INSTALL_PATH=/install/gtest /repos/tchem/src && make -j$(nproc) install:
0.326 Cloning into '/repos/tchem'...
3.012 Switched to a new branch 'tchem-kokkosv4.2'
3.012 Branch 'tchem-kokkosv4.2' set up to track remote branch 'tchem-kokkosv4.2' from 'origin'.
3.041 -- The C compiler identification is GNU 9.4.0
3.066 -- The CXX compiler identification is GNU 9.4.0
3.068 -- Check for working C compiler: /usr/bin/gcc
3.101 -- Check for working C compiler: /usr/bin/gcc -- works
3.101 -- Detecting C compiler ABI info
3.134 -- Detecting C compiler ABI info - done
3.140 -- Detecting C compile features
3.140 -- Detecting C compile features - done
3.141 -- Check for working CXX compiler: /usr/bin/g++
3.178 -- Check for working CXX compiler: /usr/bin/g++ -- works
3.179 -- Detecting CXX compiler ABI info
3.216 -- Detecting CXX compiler ABI info - done
3.222 -- Detecting CXX compile features
3.222 -- Detecting CXX compile features - done
3.226 -- CMAKE_INSTALL_LIBDIR is set lib
3.226 -- TChem uses real type DOUBLE PRECISION
3.226 -- TChem Main executable is enabled and it looks for Boost library
3.228 -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.71.0/BoostConfig.cmake (found version "1.71.0")
3.229 -- Boost version: 1.71.0
3.229 -- Boost include: /usr/include
3.229 -- Boost library:
3.229 -- TChem attempts to use Kokkos installed at /install/kokkos
3.231 -- Kokkos install path : /install/kokkos
3.231 -- Kokkos found cmake config : /install/kokkos/lib/cmake/Kokkos/KokkosConfig.cmake
3.345 -- Found OpenMP_C: -fopenmp (found version "4.5")
3.385 -- Found OpenMP_CXX: -fopenmp (found version "4.5")
3.385 -- Found OpenMP: TRUE (found version "4.5")
3.386 -- Enabled Kokkos devices: OPENMP;SERIAL
3.386 -- TChem attempts to use Tines installed at /install/tines
3.387 -- Tines install path : /install/tines
3.387 -- Tines found cmake config : /install/tines/lib/cmake/Tines/TinesConfig.cmake
3.388 -- TChem uses gtest installed at /install/gtest
3.388 -- Gtest install path : /install/gtest
3.388 -- Gtest found cmake config : /install/gtest/lib/cmake/GTest/GTestConfig.cmake
3.388 -- Looking for pthread.h
3.421 -- Looking for pthread.h - found
3.421 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD
3.457 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
3.457 -- Looking for pthread_create in pthreads
3.486 -- Looking for pthread_create in pthreads - not found
3.486 -- Looking for pthread_create in pthread
3.518 -- Looking for pthread_create in pthread - found
3.519 -- Found Threads: TRUE
3.519 -- TCHEM_LINK_LIBRARIES = tchem;Kokkos::kokkos;Tines::tines;GTest::gtest_main
3.520 -- Generating ETI: TChem_IgnitionZeroD_SacadoJacobian_Host_SLFad_16.cpp
3.520 -- Generating ETI: TChem_IgnitionZeroD_SacadoJacobian_Host_SLFad_32.cpp
3.520 -- Generating ETI: TChem_IgnitionZeroD_SacadoJacobian_Host_SLFad_64.cpp
3.521 -- Generating ETI: TChem_IgnitionZeroD_SacadoJacobian_Host_SLFad_128.cpp
3.521 -- Generating ETI: TChem_IgnitionZeroD_SacadoJacobian_Host_SLFad_256.cpp
3.521 -- Generating ETI: TChem_IgnitionZeroD_SacadoJacobian_Host_SLFad_512.cpp
3.521 -- Generating ETI: TChem_IgnitionZeroD_SacadoJacobian_Host_SLFad_1024.cpp
3.521 -- Generating ETI: TChem_TransientContStirredTankReactorSacadoJacobian_Host_SLFad_16.cpp
3.521 -- Generating ETI: TChem_TransientContStirredTankReactorSacadoJacobian_Host_SLFad_32.cpp
3.521 -- Generating ETI: TChem_TransientContStirredTankReactorSacadoJacobian_Host_SLFad_64.cpp
3.521 -- Generating ETI: TChem_TransientContStirredTankReactorSacadoJacobian_Host_SLFad_128.cpp
3.521 -- Generating ETI: TChem_TransientContStirredTankReactorSacadoJacobian_Host_SLFad_256.cpp
3.521 -- Generating ETI: TChem_TransientContStirredTankReactorSacadoJacobian_Host_SLFad_512.cpp
3.521 -- Generating ETI: TChem_TransientContStirredTankReactorSacadoJacobian_Host_SLFad_1024.cpp
3.522 -- Generating ETI: TChem_IsothermalTransientContStirredTankReactorSacadoJacobian_Host_SLFad_16.cpp
3.522 -- Generating ETI: TChem_IsothermalTransientContStirredTankReactorSacadoJacobian_Host_SLFad_32.cpp
3.522 -- Generating ETI: TChem_IsothermalTransientContStirredTankReactorSacadoJacobian_Host_SLFad_64.cpp
3.522 -- Generating ETI: TChem_IsothermalTransientContStirredTankReactorSacadoJacobian_Host_SLFad_128.cpp
3.522 -- Generating ETI: TChem_IsothermalTransientContStirredTankReactorSacadoJacobian_Host_SLFad_256.cpp
3.522 -- Generating ETI: TChem_IsothermalTransientContStirredTankReactorSacadoJacobian_Host_SLFad_512.cpp
3.522 -- Generating ETI: TChem_IsothermalTransientContStirredTankReactorSacadoJacobian_Host_SLFad_1024.cpp
3.522 -- Generating ETI: TChem_PlugFlowReactorSacadoJacobian_Host_SLFad_16.cpp
3.522 -- Generating ETI: TChem_PlugFlowReactorSacadoJacobian_Host_SLFad_32.cpp
3.522 -- Generating ETI: TChem_PlugFlowReactorSacadoJacobian_Host_SLFad_64.cpp
3.522 -- Generating ETI: TChem_PlugFlowReactorSacadoJacobian_Host_SLFad_128.cpp
3.522 -- Generating ETI: TChem_PlugFlowReactorSacadoJacobian_Host_SLFad_256.cpp
3.523 -- Generating ETI: TChem_PlugFlowReactorSacadoJacobian_Host_SLFad_512.cpp
3.523 -- Generating ETI: TChem_PlugFlowReactorSacadoJacobian_Host_SLFad_1024.cpp
3.523 -- Generating ETI: TChem_IgnitionZeroD_Host_SLFad_16.cpp
3.523 -- Generating ETI: TChem_IgnitionZeroD_Host_SLFad_32.cpp
3.523 -- Generating ETI: TChem_IgnitionZeroD_Host_SLFad_64.cpp
3.523 -- Generating ETI: TChem_IgnitionZeroD_Host_SLFad_128.cpp
3.523 -- Generating ETI: TChem_IgnitionZeroD_Host_SLFad_256.cpp
3.523 -- Generating ETI: TChem_IgnitionZeroD_Host_SLFad_512.cpp
3.523 -- Generating ETI: TChem_IgnitionZeroD_Host_SLFad_1024.cpp
3.523 -- Generating ETI: TChem_IgnitionZeroD_Host_Scalar.cpp
3.523 -- Generating ETI: TChem_IgnitionZeroD_CVODE_Host_Scalar.cpp
3.533 CMake Error at example/CMakeLists.txt:102 (ADD_EXECUTABLE):
3.533 ADD_EXECUTABLE cannot create target "TCHEM_EXAMPLE_MACRO" because another
3.533 target with the same name already exists. The existing target is an
3.533 executable created in source directory "/repos/tchem/src/example". See
3.533 documentation for policy CMP0002 for more details.
3.533
3.533
3.533 CMake Error at example/CMakeLists.txt:102 (ADD_EXECUTABLE):
3.533 ADD_EXECUTABLE cannot create target "IN" because another target with the
3.533 same name already exists. The existing target is an executable created in
3.533 source directory "/repos/tchem/src/example". See documentation for policy
3.533 CMP0002 for more details.
3.533
3.533
3.533 CMake Error at example/CMakeLists.txt:102 (ADD_EXECUTABLE):
3.533 ADD_EXECUTABLE cannot create target "ZIP_LISTS" because another target with
3.533 the same name already exists. The existing target is an executable created
3.533 in source directory "/repos/tchem/src/example". See documentation for
3.533 policy CMP0002 for more details.
3.533
3.533
3.534 CMake Error at example/CMakeLists.txt:102 (ADD_EXECUTABLE):
3.534 ADD_EXECUTABLE cannot create target "TCHEM_EXAMPLE_EXES" because another
3.534 target with the same name already exists. The existing target is an
3.534 executable created in source directory "/repos/tchem/src/example". See
3.534 documentation for policy CMP0002 for more details.
3.534
3.534
3.534 CMake Error at example/CMakeLists.txt:102 (ADD_EXECUTABLE):
3.534 ADD_EXECUTABLE cannot create target "TCHEM_EXAMPLE_MACROS" because another
3.534 target with the same name already exists. The existing target is an
3.534 executable created in source directory "/repos/tchem/src/example". See
3.534 documentation for policy CMP0002 for more details.
3.534
3.534
3.572 -- Configuring incomplete, errors occurred!
3.572 See also "/build/tchem/CMakeFiles/CMakeOutput.log".
3.572 See also "/build/tchem/CMakeFiles/CMakeError.log".
------
dockerfile:101
--------------------
100 | WORKDIR ${REPO_BASE}
101 | >>> RUN git clone https://github.com/sandialabs/TChem ${TCHEM_REPOSITORY_PATH} && \
102 | >>> cd ${TCHEM_REPOSITORY_PATH} && \
103 | >>> git checkout tchem-kokkosv4.2 && \
104 | >>> mkdir ${TCHEM_BUILD_PATH} && \
105 | >>> mkdir ${TCHEM_INSTALL_PATH} && \
106 | >>> cd ${TCHEM_BUILD_PATH} && \
107 | >>> cmake -D CMAKE_INSTALL_PREFIX=${TCHEM_INSTALL_PATH} \
108 | >>> -D CMAKE_CXX_COMPILER=g++ \
109 | >>> -D CMAKE_C_COMPILER=gcc \
110 | >>> -D CMAKE_EXE_LINKER_FLAGS="-lgfortran" \
111 | >>> -D TCHEM_ENABLE_TEST=ON \
112 | >>> -D TCHEM_ENABLE_EXAMPLE=ON \
113 | >>> -D KOKKOS_INSTALL_PATH=${KOKKOS_INSTALL_PATH} \
114 | >>> -D TINES_INSTALL_PATH=${TINES_INSTALL_PATH} \
115 | >>> -D GTEST_INSTALL_PATH=${GTEST_INSTALL_PATH} \
116 | >>> ${TCHEM_REPOSITORY_PATH}/src && \
117 | >>> make -j$(nproc) install
118 |
--------------------
ERROR: failed to solve: process "/bin/sh -c git clone https://github.com/sandialabs/TChem ${TCHEM_REPOSITORY_PATH} && cd ${TCHEM_REPOSITORY_PATH} && git checkout tchem-kokkosv4.2 && mkdir ${TCHEM_BUILD_PATH} && mkdir ${TCHEM_INSTALL_PATH} && cd ${TCHEM_BUILD_PATH} && cmake -D CMAKE_INSTALL_PREFIX=${TCHEM_INSTALL_PATH} -D CMAKE_CXX_COMPILER=g++ -D CMAKE_C_COMPILER=gcc -D CMAKE_EXE_LINKER_FLAGS=\"-lgfortran\" -D TCHEM_ENABLE_TEST=ON -D TCHEM_ENABLE_EXAMPLE=ON -D KOKKOS_INSTALL_PATH=${KOKKOS_INSTALL_PATH} -D TINES_INSTALL_PATH=${TINES_INSTALL_PATH} -D GTEST_INSTALL_PATH=${GTEST_INSTALL_PATH} ${TCHEM_REPOSITORY_PATH}/src && make -j$(nproc) install" did not complete successfully: exit code: 1
Additional similar errors appear for multiple targets like IN, ZIP_LISTS, TCHEM_EXAMPLE_EXES, and TCHEM_EXAMPLE_MACROS.
Expected Behavior:
CMake should generate the build system without conflicting target names, allowing successful compilation of TCHEM.
Observed Behavior:
CMake fails due to duplicate target names in example/CMakeLists.txt.
Attachments:
Dockerfile used for building TCHEM.
Could you please provide guidance on how to resolve this issue?
Thank you in advance for your support!