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Bugfixes to IBMQ interfacing and line ordering, add example notebook

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jupyter_notebooks/Examples
- MCFE-Example.ipynb
pygsti
- circuits
  - circuit.py
- extras/ibmq
  - ibmqexperiment.py
- protocols
  - mirror_edesign.py
- tools
  - internalgates.py

5 files changed

+666

-22

lines changed

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