update travis, added more tests

Author: EdHarry

.travis.yml

@@ -1,34 +1,36 @@
 dist: bionic
 language: python
 before_install:
-  - sudo apt-get update
+- sudo apt-get update
 python:
-  - "3.8"
+- '3.8'
 install:
-  - wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
-  - bash miniconda.sh -b -p $HOME/miniconda
-  - source "$HOME/miniconda/etc/profile.d/conda.sh"
-  - hash -r
-  - conda config --set always_yes yes --set changeps1 no
-  - conda update -q conda
-  - conda info -a
-  - conda create -q -n test-environment -c conda-forge -c bioconda -y python=$TRAVIS_PYTHON_VERSION clang gxx_linux-64 make samtools=1.10 pytest
-  - conda activate test-environment
-  - ./install
+- wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
+- bash miniconda.sh -b -p $HOME/miniconda
+- source "$HOME/miniconda/etc/profile.d/conda.sh"
+- hash -r
+- conda config --set always_yes yes --set changeps1 no
+- conda update -q conda
+- conda info -a
+- conda create -q -n test-environment -c conda-forge -c bioconda -y python=$TRAVIS_PYTHON_VERSION
+  clang gxx_linux-64 make samtools=1.10 pytest
+- conda activate test-environment
+- "./install"
 script:
-  - pytest -v
+- pytest -v
 before_deploy:
-- echo "Auto release generated by Travis CI on "$(date +'%Y:%m:%d at %H:%M:%S') > release_notes
+- echo "Auto release generated by Travis CI on "$(date +'%Y:%m:%d at %H:%M:%S') >
+  release_notes
 - export release_name="PretextMap-"$(git describe --tags)
 deploy:
   edge: true
   provider: releases
   token: "$GITHUB_TOKEN"
   file: release_notes
   name: "$release_name"
-  body: "Auto-generated release by Travis CI"
+  body: Auto-generated release by Travis CI
   prerelease: true
   on:
     tags: true
 env:
-  secure: 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
+  secure: 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