Publish the JSON file for reuse

muffato · muffato · commit 6ecfdfe2bae0 · 2025-03-14T16:24:33.000Z
diff --git a/conf/modules.config b/conf/modules.config
@@ -156,6 +156,14 @@ process {
         ]
     }
 
+    withName: "JSONIFY_TAXDUMP" {
+        publishDir = [
+            path: { "${params.outdir}/resources" },
+            mode: params.publish_dir_mode,
+            saveAs: { filename -> filename.equals("versions.yml") ? null : filename }
+        ]
+    }
+
     withName: 'MULTIQC' {
         ext.args   = { params.multiqc_title ? "--title \"$params.multiqc_title\"" : '' }
         publishDir = [

Original file line number	Diff line number	Diff line change
`@@ -156,6 +156,14 @@ process {`
`156`	`156`	`]`
`157`	`157`	`}`
`158`	`158`
	`159`	`+ withName: "JSONIFY_TAXDUMP" {`
	`160`	`+ publishDir = [`
	`161`	`+ path: { "${params.outdir}/resources" },`
	`162`	`+ mode: params.publish_dir_mode,`
	`163`	`+ saveAs: { filename -> filename.equals("versions.yml") ? null : filename }`
	`164`	`+ ]`
	`165`	`+ }`
	`166`	`+`
`159`	`167`	`withName: 'MULTIQC' {`
`160`	`168`	`ext.args = { params.multiqc_title ? "--title \"$params.multiqc_title\"" : '' }`
`161`	`169`	`publishDir = [`