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docs/usage.md

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└── run_vertebrata_odb10
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```
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The pipeline minimally requires outputs for the 'basal' lineages (archaea, eukaryota, and bacteria) -- any of these which are not present in the pre-computed outputs will be automatically detected and run.
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## Database parameters
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Configure access to your local databases with the `--busco`, `--blastp`, `--blastx`, `--blastn`, and `--taxdump` parameters.

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