Merge pull request #110 from sanger-tol/pre-release-update

1.4.2 - Pre release update V2

Author: weaglesBio

.nf-core.yml

@@ -48,4 +48,4 @@ template:
     - seqera_platform
     - multiqc
     - rocrate
-  version: 1.4.1
+  version: 1.4.2

CHANGELOG.md

@@ -3,6 +3,16 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [[1.4.2](https://github.com/sanger-tol/curationpretext/releases/tag/1.4.2)] - UNSC Nereid (H2) - [2025-07-28]
+
+### Added and Fixed
+
+- Fix to GENERATE_CRAM_CSV (by @mahesh-panchal)
+  - Missing quotations in the shell script would stop all CRAM data being taken into account.
+- Update to test data paths for Sanger local testing.
+- Corrected spelling of track value.
+- Added GNU_SORT memory allocation of 1Gb.
+
 ## [[1.4.1](https://github.com/sanger-tol/curationpretext/releases/tag/1.4.1)] - UNSC Nereid (H1) - [2025-04-14]
 
 ### Added and Fixed
@@ -13,11 +23,6 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - modules.config had an explicit `enabled = true` for pretext\_\*\_ingest steps
   - In production it looks like this was actually stopping output from that module from being output from the module.
 - NF-Schema is now 2.3.0.
-- Fix to GENERATE_CRAM_CSV (by @mahesh-panchal)
-  - Missing quotations in the shell script would stop all CRAM data being taken into account.
-- Update to test data paths for Sanger local testing.
-- Corrected spelling of track value.
-- Added GNU_SORT memory allocation of 1Gb.
 
 ### Paramters
 

CITATION.cff

@@ -30,6 +30,6 @@ identifiers:
     value: 10.5281/zenodo.12773958
 repository-code: "https://github.com/sanger-tol/curationpretext"
 license: MIT
-version: 1.4.1
-date-released: "2024-12-13"
+version: 1.4.2
+date-released: "2025-07-28"
 url: "https://pipelines.tol.sanger.ac.uk/curationpretext"

nextflow.config

@@ -259,7 +259,7 @@ manifest {
     mainScript      = 'main.nf'
     defaultBranch   = 'main'
     nextflowVersion = '!>=24.04.2'
-    version         = '1.4.1'
+    version         = '1.4.2'
     doi             = '10.5281/zenodo.12773958'
 }
 

ro-crate-metadata.json

@@ -144,9 +144,9 @@
             },
             "url": [
                 "https://github.com/sanger-tol/curationpretext",
-                "https://pipelines.tol.sanger.ac.uk/sanger-tol/curationpretext/1.4.1/"
+                "https://pipelines.tol.sanger.ac.uk/sanger-tol/curationpretext/1.4.2/"
             ],
-            "version": ["1.4.1"]
+            "version": ["1.4.2"]
         },
         {
             "@id": "https://w3id.org/workflowhub/workflow-ro-crate#nextflow",

tests/main.nf.test.snap

@@ -125,7 +125,7 @@
                     "windowmasker": "1.0.0"
                 },
                 "Workflow": {
-                    "sanger-tol/curationpretext": "v1.4.1"
+                    "sanger-tol/curationpretext": "v1.4.2"
                 }
             },
             [