Failed to pull singularity image #43
Description
Description of the bug
I was trying to run the sanger-tol/curationpretext pipeline to generate the contact map for my genome, but it gives me a "Failed to pull singularity image" which seems to come from "access to the requested resource is not authorized" (I am running it in a job in HTCondor). Is there something I am missing in the configuration?
Command used and terminal output
nextflow run sanger-tol/curationpretext \
--input assembly.fasta \
--cram cram_files/ \
--longread in/ \
--longread_type ont \
--sample cb3 \
--teloseq AATGG \
--outdir output_dir \
-profile singularity
Failed to pull singularity image
command: singularity pull --name quay.io-sanger-tol-cramfilter_bwamem2_minimap2_samtools_perl-0.001-c1.img.pulling.1731944247517 docker://quay.io/sanger-tol/cramfilter_bwamem2_minimap2_samtools_perl:0.001-c1 > /dev/null
status : 255
hint : Try and increase singularity.pullTimeout in the config (current is "20m")
message:
INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html)
FATAL: While making image from oci registry: error fetching image to cache: failed to get checksum for docker://quay.io/sanger-tol/cramfilter_bwamem2_minimap2_samtools_perl:0.001-c1: reading manifest 0.001-c1 in quay.io/sanger-tol/cramfilter_bwamem2_minimap2_samtools_perl: unauthorized: access to the requested resource is not authorizedRelevant files
No response
System information
No response
Metadata
Metadata
Assignees
Labels
Type
Projects
Status