GAWK additions #77
Description
Description of feature
This module can also be replaced with a single GAWK module call using the below.
BEGIN {OFS = "\t"}
{gsub(">", ""); print $2, $4, $5 > prefix "_telomere.bed" }
{gsub(">", ""); print $2,$4,$5,((($5-$4)<0)?-($5-$4):($5-$4)) > prefix "_telomere.bedgraph" }
Pass "-v prefix=${meta.id}..." in ext.args and enable the disable_redirect_output channel in the GAWK module.
edit: and will have to set ext.suffix to some glob like ".bed*" - this might not actually work
Investigate GAWK module for the above by @prototaxites