tollongc_lint.md

Nextflow lint results

• Generated: 2026-03-24T10:47:30.998869611Z
• Nextflow version: 26.03.0-edge
• Summary: 8 warnings

⚠️ Warnings

• Warning: subworkflows/local/utils_nfcore_tollongc_pipeline/main.nf:31:5: Parameter was not used -- prefix with _ to suppress warning

      monochrome_logs   // boolean: Do not use coloured log outputs
      ^^^^^^^^^^^^^^^

• Warning: subworkflows/local/utils_nfcore_tollongc_pipeline/main.nf:34:5: Parameter was not used -- prefix with _ to suppress warning

      input             //  string: Path to input samplesheet
      ^^^^^

• Warning: subworkflows/local/utils_nfcore_tollongc_pipeline/main.nf:38:19: The use of Channel to access channel factories is deprecated -- use channel instead

      ch_versions = Channel.empty()
                    ^^^^^^^

• Warning: subworkflows/local/utils_nfcore_tollongc_pipeline/main.nf:70:5: The use of Channel to access channel factories is deprecated -- use channel instead

      Channel
      ^^^^^^^

• Warning: subworkflows/nf-core/utils_nfcore_pipeline/main.nf:101:98: The use of Channel to access channel factories is deprecated -- use channel instead

      return ch_versions.unique().map { version -> processVersionsFromYAML(version) }.unique().mix(Channel.of(workflowVersionToYAML()))
                                                                                                   ^^^^^^^

• Warning: workflows/tollongc.nf:19:5: Parameter was not used -- prefix with _ to suppress warning

      ch_samplesheet // channel: samplesheet read in from --input
      ^^^^^^^^^^^^^^

• Warning: workflows/tollongc.nf:22:19: The use of Channel to access channel factories is deprecated -- use channel instead

      ch_versions = Channel.empty()
                    ^^^^^^^

• Warning: workflows/tollongc.nf:33:17: Variable was declared but not used

          ).set { ch_collated_versions }
                  ^^^^^^^^^^^^^^^^^^^^