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1 parent 74632db commit 2794254Copy full SHA for 2794254
subworkflows/local/gene_alignment.nf
@@ -54,11 +54,12 @@ workflow GENE_ALIGNMENT {
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// }
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.splitCsv( header: true, sep:',')
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.map{ row ->
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+ def data_file = file(row.data_file, checkIfExists: true)
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tuple([ org: row.org,
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type: row.type,
- id: row.data_file.name.split('.MOD.').first()
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+ id: data_file.name.split('.MOD.').first()
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],
- file(row.data_file)
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+ data_file
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)}
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.branch {
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pep: it[0].type == 'pep'
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