Resource update

Author: weaglesBio

conf/base.config

@@ -125,7 +125,16 @@ process {
     // RESOURCES: CHANGES TO FREQUENT FAILURES BELOW THIS MEM POINT
     withName: '.*:.*:GENE_ALIGNMENT:.*:MINIPROT_ALIGN' {
         cpus   = { 6    * task.attempt }
-        memory = { 1.GB * ( ref.size() < 2e9 ? 50 : Math.ceil( ( ref.size() / 1e+9 ) * 20 ) * Math.ceil( task.attempt * 1 ) ) }
+        memory = {
+                1.GB * (
+                reference.size() < 2e9 ? 30 :
+                (reference.size() < 5e9 ? 50 :
+                (reference.size() < 10e9 ? 60 :
+                Math.ceil((reference.size() / 1e9) * 3)
+                    )
+                )
+            ) * Math.ceil(task.attempt * 1)
+        }
         time   = { 10.h * task.attempt }
     }
 
@@ -143,9 +152,18 @@ process {
 
     // Standard parameters, covers most insecta. However the memory should be approx 10 * genome size
     withName: '.*:.*:READ_COVERAGE:MINIMAP2_ALIGN' {
-        cpus    = { 20   * 1 }
-        memory  = { 1.GB * ( reference.size() < 2e9 ? 50 : Math.ceil( ( reference.size() / 1e+9 ) * 2.5 ) * Math.ceil( task.attempt * 1 ) ) }
-        time    = { 1.h  * ( reference.size() < 1e9 ? 10 : reference.size() < 10e9 ? 30 : 48) }
+        cpus   = { 20   * 1 }
+        memory = {
+                1.GB * (
+                reference.size() < 2e9 ? 30 :
+                (reference.size() < 5e9 ? 40 :
+                (reference.size() < 10e9 ? 60 :
+                Math.ceil((reference.size() / 1e9) * 3)
+                    )
+                )
+            ) * Math.ceil(task.attempt * 1)
+        }
+        time   = { 1.h  * ( reference.size() < 1e9 ? 10 : reference.size() < 10e9 ? 30 : 48) }
     }
 
     withName: '.*:.*:READ_COVERAGE:BEDTOOLS_GENOMECOV' {
@@ -170,8 +188,17 @@ process {
     }
 
     withName: CRAM_FILTER_MINIMAP2_FILTER5END_FIXMATE_SORT {
-        cpus    = { 16   * 1 }
-        memory  = { 1.GB * ( reference.size() < 2e9 ? 50 : Math.ceil( ( reference.size() / 1e+9 ) * 3 ) * Math.ceil( task.attempt * 1 ) ) }
+        cpus   = { 16   * 1 }
+        memory = {
+                1.GB * (
+                reference.size() < 2e9 ? 30 :
+                (reference.size() < 5e9 ? 40 :
+                (reference.size() < 10e9 ? 60 :
+                Math.ceil((reference.size() / 1e9) * 3)
+                    )
+                )
+            ) * Math.ceil(task.attempt * 1)
+        }
     }
 
     withName: SNAPSHOT_SRES {