Update pipeline script for running stages 7 and 8

Author: iniyannatarajan

ehthops/ehthops_pipeline.sh

@@ -122,7 +122,7 @@ do
     # Run stage 7 after the 6 uvfits stage; INPUTDIR is now 6.uvfits
     if [ $stage == "7.+apriori" ]
     then
-        SET_INPUTDIR="$workdir/6.uvfits" && SET_METADIR="${config[SET_METADIR]}" && SET_OBSYEAR="${config[SET_OBSYEAR]}" && source bin/0.launch
+        SET_EHTIMPATH="${config[SET_EHTIMPATH]}" && SET_INPUTDIR="$workdir/6.uvfits" && SET_METADIR="${config[SET_METADIR]}" && SET_OBSYEAR="${config[SET_OBSYEAR]}" && SET_CAMPAIGN="${config[SET_CAMPAIGN]}" && source bin/0.launch
         source bin/1.antab2sefd
         source bin/2.applycal
         source bin/3.import
@@ -132,14 +132,14 @@ do
     # Run stage 8 after the 7 apriori stage; INPUTDIR is now 7.+apriori
     if [ $stage == "8.+polcal" ]
     then
-        SET_INPUTDIR="$workdir/7.+apriori" && SET_METADIR="${config[SET_METADIR]}" && SET_OBSYEAR="${config[SET_OBSYEAR]}" && source bin/0.launch
+        SET_EHTIMPATH="${config[SET_EHTIMPATH]}" && SET_INPUTDIR="$workdir/7.+apriori" && SET_METADIR="${config[SET_METADIR]}" && SET_OBSYEAR="${config[SET_OBSYEAR]}" && SET_CAMPAIGN="${config[SET_CAMPAIGN]}" && source bin/0.launch
         source bin/1.gainratiocal
         source bin/2.import
         source bin/3.average
     fi
 
     # copy control files and necessary scripts to the next stage
-    if [[ $stage != "7.+apriori" && $stage != "8.+polcal" ]]
+    if [[ $stage != "8.+polcal" ]]
     then
         source bin/9.next
     fi