I am currently trying to download the mouse brain spatial transcriptomics data. Everytime I attempt to do this I get an error message displaying the following below.
Error in download.file(url, destfile, method, mode = "wb", ...) : download from 'http://seurat.nygenome.org/src/contrib/stxBrain.SeuratData_0.1.2.tar.gz' failed In addition: Warning messages: 1: In download.file(url, destfile, method, mode = "wb", ...) : downloaded length 23199468 != reported length 142661912 2: In download.file(url, destfile, method, mode = "wb", ...) : URL 'https://seurat.nygenome.org/src/contrib/stxBrain.SeuratData_0.1.2.tar.gz': Timeout of 60 seconds was reached Warning in download.packages(pkgs, destdir = tmpd, available = available, : download of package ‘stxBrain.SeuratData’ failed Error in loadNamespace(name) : there is no package called ‘stxBrain.SeuratData’
My code:
SeuratData::InstallData("stxBrain.SeuratData")
System Environment:
OS: rocker/rstudio docker image built on Ubuntu,
Version: Seurat V 4.4.0
SeuratData: satijalab/seurat-data@v0.2.1
I am currently trying to download the mouse brain spatial transcriptomics data. Everytime I attempt to do this I get an error message displaying the following below.
Error in download.file(url, destfile, method, mode = "wb", ...) : download from 'http://seurat.nygenome.org/src/contrib/stxBrain.SeuratData_0.1.2.tar.gz' failed In addition: Warning messages: 1: In download.file(url, destfile, method, mode = "wb", ...) : downloaded length 23199468 != reported length 142661912 2: In download.file(url, destfile, method, mode = "wb", ...) : URL 'https://seurat.nygenome.org/src/contrib/stxBrain.SeuratData_0.1.2.tar.gz': Timeout of 60 seconds was reached Warning in download.packages(pkgs, destdir = tmpd, available = available, : download of package ‘stxBrain.SeuratData’ failed Error in loadNamespace(name) : there is no package called ‘stxBrain.SeuratData’My code:
SeuratData::InstallData("stxBrain.SeuratData")System Environment:
OS: rocker/rstudio docker image built on Ubuntu,
Version: Seurat V 4.4.0
SeuratData: satijalab/seurat-data@v0.2.1