Incorrect classpath because `INCLUDE` field in pom file is ignored

[adpi2]

Describe the bug

This bug originated in scalameta/metals#5807 (comment) and was reported by @PhilDakin and @gerashegalov

When importing this pom file which contains:

                             <resources>
                                <resource>
                                    <directory>${spark.rapids.source.basedir}</directory>
                                    <targetPath>META-INF</targetPath>
                                    <includes>
                                        <!-- The NOTICE will be taken care of by the antrun task below -->
                                        <include>LICENSE</include>
                                        <include>NOTICE</include>
                                    </includes>
                                </resource>
                                <resource>
                                    <directory>${spark.rapids.source.basedir}/python</directory>
                                </resource>
                            </resources>

The entire ${spark.rapids.source.basedir} directory ends up in the classpaths, which shadows other entries.

Expected behavior

It should isolate LICENSE and NOTICE in a different folder and add that folder to the classpath.

Operating system

None

Version of Maven

???

Version of bloop-maven-plugin

2.0.0

Version of Bloop

1.6.0