Merge pull request #280 from scenerygraphics/ui-updates

UI updates:

* usage of flatlaf if run as standalone (https://www.formdev.com/flatlaf/)
* nicer inspector panel, which is collapsible to the sidebar
* nicer REPL panel, which is also collapsible to the sidebar

Also adds a new command to load Cremi datasets and segmentations, which is the first Kotlin-powered command 🥳

Author: skalarproduktraum

README.md

@@ -47,3 +47,11 @@ In case you use sciview or scenery in a scientific publication, please cite this
 **Triggering uploads to the update site:**
 
 Add either `[SV_IJ_DEPLOY_UNSTABLE]` or `[SV_IJ_DEPLOY_PRIMARY]` to a commit message
+
+## Acknowledgements
+
+This software contains the following 3rd party libraries:
+
+* IntelliJ UI code, by JetBrains (licensed under the Apache Software License 2.0), see `src/main/java/com/intellij`
+* trove4j, by the Trove4j team (licensed under the Lesser GNU Public License 3.0), see `src/main/java/gnu`
+

pom.xml

@@ -108,10 +108,11 @@
 		<!-- NB: Deploy releases to the SciJava Maven repository. -->
 		<releaseProfiles>deploy-to-scijava</releaseProfiles>
 
-		<scenery.version>5778367</scenery.version>
+		<scenery.version>0797d5d2</scenery.version>
 
-		<kotlin.version>1.4-M3</kotlin.version>
-		<kotlinx-coroutines-core.version>1.3.7-1.4-M3</kotlinx-coroutines-core.version>
+		<kotlin.version>1.4.0</kotlin.version>
+		<kotlinx-coroutines-core.version>1.3.9</kotlinx-coroutines-core.version>
+		<kotlin.compiler.jvmTarget>1.8</kotlin.compiler.jvmTarget>
 
 	</properties>
 
@@ -146,6 +147,12 @@
 			<version>${jogl.version}</version>
 		</dependency>
 
+		<dependency>
+			<groupId>com.formdev</groupId>
+			<artifactId>flatlaf</artifactId>
+			<version>0.38</version>
+		</dependency>
+
 		<!-- SciJava dependencies -->
 		<dependency>
 			<groupId>org.scijava</groupId>
@@ -301,6 +308,10 @@
 			<groupId>org.janelia.saalfeldlab</groupId>
 			<artifactId>n5</artifactId>
 		</dependency>
+		<dependency>
+			<groupId>org.janelia.saalfeldlab</groupId>
+			<artifactId>n5-hdf5</artifactId>
+		</dependency>
 		<dependency>
 			<groupId>org.janelia.saalfeldlab</groupId>
 			<artifactId>n5-imglib2</artifactId>
@@ -309,11 +320,22 @@
 			<groupId>sc.fiji</groupId>
 			<artifactId>spim_data</artifactId>
 		</dependency>
+		<dependency>
+			<groupId>org.jetbrains.kotlin</groupId>
+			<artifactId>kotlin-stdlib-jdk8</artifactId>
+			<version>${kotlin.version}</version>
+		</dependency>
+		<dependency>
+			<groupId>org.jetbrains.kotlin</groupId>
+			<artifactId>kotlin-test-junit</artifactId>
+			<version>${kotlin.version}</version>
+			<scope>test</scope>
+		</dependency>
+
 	</dependencies>
 
 	<build>
-		<sourceDirectory>src/main/java</sourceDirectory>
-        <testSourceDirectory>src/test/tests</testSourceDirectory>
+		<testSourceDirectory>src/test/tests</testSourceDirectory>
 		<plugins>
 			<plugin>
                 <groupId>org.apache.maven.plugins</groupId>
@@ -324,6 +346,86 @@
                     <reuseForks>true</reuseForks>
                 </configuration>
             </plugin>
+			<plugin>
+				<groupId>org.jetbrains.kotlin</groupId>
+				<artifactId>kotlin-maven-plugin</artifactId>
+				<version>${kotlin.version}</version>
+				<executions>
+					<execution>
+						<id>compile</id>
+						<phase>compile</phase>
+						<goals> <goal>compile</goal> </goals>
+						<configuration>
+							<sourceDirs>
+								<source>src/main/java</source>
+								<source>target/generated-sources/kapt</source>
+								<source>target/generated-sources/kaptKotlin</source>
+							</sourceDirs>
+							<jvmTarget>${kotlin.compiler.jvmTarget}</jvmTarget>
+							<args>
+								<arg>-Werror</arg>
+								<arg>-Xopt-in=kotlin.RequiresOptIn</arg>
+							</args>
+						</configuration>
+					</execution>
+					<execution>
+						<id>test-compile</id>
+						<phase>test-compile</phase>
+						<goals> <goal>test-compile</goal> </goals>
+						<configuration>
+							<sourceDirs>
+								<sourceDir>${project.basedir}/src/test/tests</sourceDir>
+							</sourceDirs>
+						</configuration>
+					</execution>
+					<execution>
+						<id>kapt</id>
+						<goals>
+							<goal>kapt</goal>
+						</goals>
+						<configuration>
+							<sourceDirs>
+								<sourceDir>src/main/kotlin</sourceDir>
+								<sourceDir>src/main/java</sourceDir>
+							</sourceDirs>
+							<annotationProcessorPaths>
+								<annotationProcessorPath>
+									<groupId>org.scijava</groupId>
+									<artifactId>scijava-common</artifactId>
+									<version>${scijava-common.version}}</version>
+								</annotationProcessorPath>
+							</annotationProcessorPaths>
+						</configuration>
+					</execution>
+				</executions>
+				<configuration>
+					<jvmTarget>${kotlin.compiler.jvmTarget}</jvmTarget>
+					<args>
+						<arg>-Werror</arg>
+						<arg>-Xopt-in=kotlin.RequiresOptIn</arg>
+					</args>
+				</configuration>
+			</plugin>
+			<plugin>
+				<groupId>org.apache.maven.plugins</groupId>
+				<artifactId>maven-compiler-plugin</artifactId>
+				<executions>
+					<execution>
+						<id>compile</id>
+						<phase>compile</phase>
+						<goals>
+							<goal>compile</goal>
+						</goals>
+					</execution>
+					<execution>
+						<id>testCompile</id>
+						<phase>test-compile</phase>
+						<goals>
+							<goal>testCompile</goal>
+						</goals>
+					</execution>
+				</executions>
+			</plugin>
 		</plugins>
 	</build>
 

src/main/java/com/intellij/openapi/Disposable.java

@@ -0,0 +1,33 @@
+/*
+ * Copyright 2000-2009 JetBrains s.r.o.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package com.intellij.openapi;
+
+/**
+ * This class marks classes, which require some work done for cleaning up.
+ * As a general policy you shouldn't call the {@link #dispose} method directly,
+ * but register your object to be chained with a parent disposable via {@link com.intellij.openapi.util.Disposer#register(Disposable, Disposable)}.
+ * If you're 100% sure that you should control disposion of your object manually,
+ * do not call the {@link #dispose} method either. Use {@link com.intellij.openapi.util.Disposer#dispose(Disposable)} instead, since
+ * there might be any object registered in chain.
+ */
+public interface Disposable {
+  void dispose();
+
+  interface Parent extends Disposable {
+    void beforeTreeDispose();
+  }
+
+}

src/main/java/com/intellij/openapi/diagnostic/ApplicationInfoProvider.java

@@ -0,0 +1,22 @@
+/*
+ * Copyright 2000-2009 JetBrains s.r.o.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package com.intellij.openapi.diagnostic;
+
+public interface ApplicationInfoProvider {
+
+  String getInfo();
+
+}

src/main/java/com/intellij/openapi/diagnostic/ControlFlowException.java

@@ -0,0 +1,22 @@
+/*
+ * Copyright 2000-2015 JetBrains s.r.o.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package com.intellij.openapi.diagnostic;
+
+/**
+ * A marker interface for exceptions that should never be logged.
+ */
+@SuppressWarnings("NonExceptionNameEndsWithException")
+public interface ControlFlowException { }

src/main/java/com/intellij/openapi/diagnostic/DefaultLogger.java

@@ -0,0 +1,84 @@
+/*
+ * Copyright 2000-2015 JetBrains s.r.o.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package com.intellij.openapi.diagnostic;
+
+import com.intellij.openapi.util.text.StringUtil;
+import com.intellij.util.ExceptionUtil;
+import org.apache.log4j.Level;
+import org.jetbrains.annotations.NonNls;
+import org.jetbrains.annotations.NotNull;
+import org.jetbrains.annotations.Nullable;
+
+public class DefaultLogger extends Logger {
+  @SuppressWarnings("UnusedParameters")
+  public DefaultLogger(String category) { }
+
+  @Override
+  public boolean isDebugEnabled() {
+    return false;
+  }
+
+  @Override
+  public void debug(String message) { }
+
+  @Override
+  public void debug(Throwable t) { }
+
+  @Override
+  public void debug(@NonNls String message, Throwable t) { }
+
+  @Override
+  public void info(String message) { }
+
+  @Override
+  public void info(String message, Throwable t) { }
+
+  @Override
+  @SuppressWarnings("UseOfSystemOutOrSystemErr")
+  public void warn(@NonNls String message, @Nullable Throwable t) {
+    t = checkException(t);
+    System.err.println("WARN: " + message);
+    if (t != null) t.printStackTrace(System.err);
+  }
+
+  @Override
+  @SuppressWarnings("UseOfSystemOutOrSystemErr")
+  public void error(String message, @Nullable Throwable t, @NotNull String... details) {
+    t = checkException(t);
+    message += attachmentsToString(t);
+    System.err.println("ERROR: " + message);
+    if (t != null) t.printStackTrace(System.err);
+    if (details.length > 0) {
+      System.out.println("details: ");
+      for (String detail : details) {
+        System.out.println(detail);
+      }
+    }
+
+    AssertionError error = new AssertionError(message);
+    error.initCause(t);
+    throw error;
+  }
+
+  @Override
+  public void setLevel(Level level) { }
+
+  public static String attachmentsToString(@Nullable Throwable t) {
+    //noinspection ThrowableResultOfMethodCallIgnored
+    Throwable rootCause = t == null ? null : ExceptionUtil.getRootCause(t);
+    return "";
+  }
+}