Saving hyperstack as .ims fails

[imagejan]

When trying the following script:

#@ DatasetIOService io
#@ Dataset img
#@ File (style="save") file

io.save(img, file.getAbsolutePath())

with the Mitosis sample image (2C x 5Z x 51T) and a file name ending on ".ims", I get the following stack trace:

java.io.IOException: io.scif.img.ImgIOException: io.scif.FormatException: SCIFIO exception when writing to file FileLocation:file:/E:/eglijan/temp-debug/testSavingSCIFIO.ims:
Channels * Frames * Z Slices must equal number of planes
	at io.scif.services.DefaultDatasetIOService.save(DefaultDatasetIOService.java:259)
	at io.scif.services.DefaultDatasetIOService.save(DefaultDatasetIOService.java:231)
	at io.scif.services.DatasetIOService$save.call(Unknown Source)
	at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:47)
	at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:115)
	at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:135)
	at Script3.run(Script3.groovy:5)
	at org.scijava.plugins.scripting.groovy.GroovyScriptEngine.eval(GroovyScriptEngine.java:303)
	at org.scijava.plugins.scripting.groovy.GroovyScriptEngine.eval(GroovyScriptEngine.java:122)
	at javax.script.AbstractScriptEngine.eval(AbstractScriptEngine.java:264)
	at org.scijava.script.ScriptModule.run(ScriptModule.java:160)
	at org.scijava.module.ModuleRunner.run(ModuleRunner.java:168)
	at org.scijava.module.ModuleRunner.call(ModuleRunner.java:127)
	at org.scijava.module.ModuleRunner.call(ModuleRunner.java:66)
	at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:228)
	at java.util.concurrent.FutureTask.run(FutureTask.java:266)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)
Caused by: io.scif.img.ImgIOException: io.scif.FormatException: SCIFIO exception when writing to file FileLocation:file:/E:/eglijan/temp-debug/testSavingSCIFIO6.ims:
Channels * Frames * Z Slices must equal number of planes
	at io.scif.img.ImgSaver.writeImg(ImgSaver.java:437)
	at io.scif.img.ImgSaver.writeImg(ImgSaver.java:414)
	at io.scif.img.ImgSaver.writeImg(ImgSaver.java:390)
	at io.scif.img.ImgSaver.saveImg(ImgSaver.java:175)
	at io.scif.img.ImgSaver.saveImg(ImgSaver.java:158)
	at io.scif.services.DefaultDatasetIOService.save(DefaultDatasetIOService.java:256)
	... 18 more

(tested with scifio-hdf5-0.2.0 and scifio-0.38.3-SNAPSHOT on the classpath)

[imagejan]

After changing this line to include the actual numbers:

scifio-hdf5/src/main/java/io/scif/formats/ImarisFormat.java

Line 107 in a287668

"Channels * Frames * Z Slices must equal number of planes");

- 					"Channels * Frames * Z Slices must equal number of planes");
+ 					"Channels (" + sizeC + ") * Frames (" + sizeT + ") * Z Slices (" + sizeZ + ") must equal number of planes (" + meta.get(0).getPlaneCount() + ")");

I observed that meta.get(0).getPlaneCount() returns 255 in this case, whereas the Mitosis dataset contains 510 planes (CZT).