Doc add tutorial figure3 #35
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| name: Test tutorial bash scripts | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| merge_group: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| MPLBACKEND: agg | |
| OPENBLAS_NUM_THREADS: 1 | |
| PYTEST_XDIST_AUTO_NUM_WORKERS: 8 | |
| jobs: | |
| test: | |
| runs-on: scilus-large | |
| if: github.repository == 'scilus/scilpy' | |
| steps: | |
| - name: Checkout repository at merge | |
| uses: actions/checkout@v4 | |
| - name: Fetch python version from repository | |
| id: python-selector | |
| run: echo "python-version=$(head -1 .python-version)" >> $GITHUB_OUTPUT | |
| - name: Set up Python and uv for Scilpy | |
| uses: astral-sh/[email protected] | |
| with: | |
| python-version: ${{ steps.python-selector.outputs.python-version }} | |
| activate-environment: true | |
| enable-cache: true | |
| - name: Install non-python dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y \ | |
| build-essential \ | |
| curl \ | |
| git \ | |
| libblas-dev \ | |
| liblapack-dev \ | |
| libfreetype6-dev \ | |
| libdrm-dev \ | |
| libgl1-mesa-dev \ | |
| libosmesa6-dev \ | |
| wget | |
| - name: stdlib checkout | |
| if: ${{ !contains(steps.python-selector.outputs.python-version, '3.12') }} | |
| run: | | |
| echo "SETUPTOOLS_USE_DISTUTILS=stdlib" >> "$GITHUB_ENV" | |
| - name: Install Scilpy | |
| run: | | |
| uv pip install --upgrade pip wheel | |
| uv pip install --upgrade "setuptools<71.0.0" | |
| uv pip install -e . | |
| # TODO: to adapt once Scilpy passes to VTK 9.4.0, which selects OSMesa at runtime | |
| # https://discourse.vtk.org/t/status-update-runtime-opengl-render-window-selection-in-vtk/14583 | |
| VTK_VERSION=$(cat pyproject.toml | grep 'vtk==' | sed 's/vtk==//g' | sed 's/\"//g' ) | |
| uv pip install --extra-index-url https://wheels.vtk.org vtk-osmesa==$VTK_VERSION | |
| uv pip install pytest-xdist pytest-cov | |
| uv pip install gdown | |
| - name: Run tests | |
| run: | | |
| chmod +x docs/source/_static/bash/*/*.sh | |
| # Get data | |
| gdown https://drive.google.com/file/d/1DYQ1LHgqB_wloKmUmIcc6ORaHld0U972/view?usp=sharing --fuzzy | |
| #tar -xvf data_for_test.tar.gz | |
| #rm data_for_test.tar.gz | |
| unzip data_for_test.zip | |
| rm data_for_test.zip | |
| here=`pwd` | |
| input_path=$here/data_for_test | |
| for script in docs/source/_static/bash/*/*.sh; | |
| do | |
| tmpdir=$(mktemp -d) | |
| cd "$tmpdir" | |
| output_folder=$tmpdir | |
| echo "Running $script..." | |
| # We made sure that all our scripts receive as input the path to our tutorial data. | |
| bash "$here/$script" $input_path $output_folder | |
| done |