Adding option in custom-color for coverage #1992
Workflow file for this run
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| name: Scilpy test suite | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| merge_group: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| MPLBACKEND: agg | |
| OPENBLAS_NUM_THREADS: 1 | |
| PYTEST_XDIST_AUTO_NUM_WORKERS: 8 | |
| jobs: | |
| test: | |
| runs-on: scilus-large | |
| if: github.repository == 'scilus/scilpy' | |
| steps: | |
| - name: Checkout repository at merge | |
| uses: actions/checkout@v4 | |
| - name: Fetch python version from repository | |
| id: python-selector | |
| run: | | |
| echo "python-version=$(head -1 .python-version)" >> $GITHUB_OUTPUT | |
| echo "C_INCLUDE_PATH=$pythonLocation/include/python$(head -1 .python-version):$C_INCLUDE_PATH" >> $GITHUB_ENV | |
| - name: Set up Python and uv for Scilpy | |
| uses: astral-sh/[email protected] | |
| with: | |
| python-version: ${{ steps.python-selector.outputs.python-version }} | |
| activate-environment: true | |
| enable-cache: true | |
| - name: Install non-python dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y \ | |
| build-essential \ | |
| curl \ | |
| git \ | |
| libblas-dev \ | |
| liblapack-dev \ | |
| libfreetype6-dev \ | |
| libdrm-dev \ | |
| libgl1-mesa-dev \ | |
| libosmesa6-dev | |
| - name: stdlib checkout | |
| if: ${{ !contains(steps.python-selector.outputs.python-version, '3.12') }} | |
| run: | | |
| echo "SETUPTOOLS_USE_DISTUTILS=stdlib" >> "$GITHUB_ENV" | |
| - name: Install Scilpy | |
| run: | | |
| uv pip install --upgrade pip wheel | |
| uv pip install --upgrade "setuptools<71.0.0" | |
| uv pip install -e . | |
| # TODO: to adapt once Scilpy passes to VTK 9.4.0, which selects OSMesa at runtime | |
| # https://discourse.vtk.org/t/status-update-runtime-opengl-render-window-selection-in-vtk/14583 | |
| VTK_VERSION=$(cat pyproject.toml | grep 'vtk==' | sed 's/vtk==//g' | sed 's/\"//g' ) | |
| uv pip install --extra-index-url https://wheels.vtk.org vtk-osmesa==$VTK_VERSION | |
| uv pip install pytest-xdist pytest-cov | |
| scil_data_download | |
| scil_search_keywords test --regenerate_help_files --processes 8 | |
| - name: Run unit tests | |
| run: | | |
| uv run --active pytest src/scilpy --cov-report term-missing:skip-covered --dist=loadgroup --ignore=src/scilpy/cli | |
| mv .test_reports unit_test_reports | |
| - name: Run smoke tests | |
| run: | | |
| uv run --active pytest src/scilpy/cli --cov-report term-missing:skip-covered --dist=loadgroup | |
| mv .coverage .coverage.smoke | |
| mv .test_reports smoke_test_reports | |
| - name: Save test results and coverage | |
| uses: actions/upload-artifact@v4 | |
| id: test-coverage-results | |
| with: | |
| name: test-coverage-${{ github.run_id }} | |
| retention-days: 1 | |
| include-hidden-files: true | |
| path: | | |
| unit_test_reports/ | |
| smoke_test_reports/ | |
| coverage: | |
| runs-on: ubuntu-latest | |
| if: github.repository == 'scilus/scilpy' | |
| needs: test | |
| steps: | |
| - name: Checkout repository at merge | |
| uses: actions/checkout@v4 | |
| - name: Download test results and coverage | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: test-coverage-${{ github.run_id }} | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/[email protected] | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: unit_test_reports/* | |
| disable_search: true | |
| flags: unittests | |
| name: scilpy-tests-${{ github.run_id }}-${{ github.run_attempt }} | |
| verbose: true | |
| fail_ci_if_error: true | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/[email protected] | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: smoke_test_reports/* | |
| disable_search: true | |
| flags: smoketests | |
| name: scilpy-tests-${{ github.run_id }}-${{ github.run_attempt }} | |
| verbose: true | |
| fail_ci_if_error: true |