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Original file line number Diff line number Diff line change @@ -7,7 +7,6 @@ This section covers bundle analysis methods in scilpy.
77 :maxdepth: 1
88
99 tractogram_segmentation
10- bundle_diameter_fitting_function
1110 profilometry
1211 tractometry
1312 create_population_template
Original file line number Diff line number Diff line change 1717 - or if fanning is in 2 directions (uniform dispersion), leads to a good
1818 approximation
1919
20+ Fitting func
21+ ------------
22+ Choices are:
23+ - None: Default, all points are weighted equally no matter their
24+ (normalized 0-1) distance to the barycenter.
25+ - lin_up: Points are weighted using their distance to the barycenter
26+ (linear, x). Farther = increased weight. Bigger envelope.
27+ - lin_down: Points are weighted using their distance to the barycenter
28+ (linear, 1-x). Farther = decreased weight. Smaller envelope.
29+ - exp: Points are weighted using their distance to the barycenter
30+ (exponential, e^x). Farther = decreased weight. Smaller envelope.
31+ - inv: Points are weighted using their distance to the barycenter
32+ (inverse, 1/x). Farther = decreased weight. Much smaller envelope.
33+ - log: Points are weighted using their distance to the barycenter
34+ (logarithmic, ln x+1). Farther = increased weight. Bigger envelope.
35+
2036The scripts prints a JSON file with mean/std. This is compatible with our
2137tractometry scripts.
2238WARNING: STD is in fact an ERROR measure from the fit and NOT an STD.
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