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ENH: Add option to keep original json structure for one input roi #1281

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Nov 24, 2025
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ENH: Add option to keep original json structure for one input roi #1281

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6 changes: 5 additions & 1 deletion src/scilpy/cli/scil_volume_stats_in_ROI.py
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Original file line number Diff line number Diff line change
Expand Up @@ -38,6 +38,10 @@ def _build_arg_parser():
help='ROIs volume filenames.\nCan be binary masks or '
'weighted masks.')

p.add_argument('--keep_unique_roi_name', action='store_true',
help='If set, will keep the same JSON structure even if only '
'one ROI is provided as input.')

g = p.add_argument_group('Metrics input options')
gg = g.add_mutually_exclusive_group(required=True)
gg.add_argument('--metrics_dir', metavar='dir',
Expand Down Expand Up @@ -139,7 +143,7 @@ def main():
'Metric {} is not a 3D image ({}D shape).'
.format(f, len(metric_img.shape)))

if len(args.in_rois) == 1:
if len(args.in_rois) == 1 and not args.keep_unique_roi_name:
json_stats = json_stats[roi_name]

# Print results
Expand Down