📝 add scanpy as dependent project
#1631
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: [master] | |
| pull_request: | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.sha }} | |
| cancel-in-progress: true | |
| permissions: | |
| contents: read | |
| pull-requests: write | |
| env: | |
| UV_LOCKED: 1 | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 2 | |
| steps: | |
| - uses: actions/checkout@v4.2.2 | |
| - uses: scientific-python/repo-review@v0.12.2 | |
| with: | |
| plugins: sp-repo-review | |
| - name: dprint | |
| uses: dprint/check@v2.3 | |
| - name: typos | |
| uses: crate-ci/typos@v1.34.0 | |
| - uses: astral-sh/setup-uv@v6.3.1 | |
| with: | |
| activate-environment: true | |
| python-version: "3.13" | |
| - name: ruff | |
| run: | | |
| uv run ruff check --output-format=github | |
| uv run ruff format --check | |
| # mypy_primer expects pyright to pass | |
| - name: pyright | |
| uses: jakebailey/pyright-action@v2.3.2 | |
| generate-matrix: | |
| name: Generate Test Matrix | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 1 | |
| outputs: | |
| matrix: ${{ steps.set-matrix.outputs.matrix }} | |
| steps: | |
| - uses: actions/checkout@v4.2.2 | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v6.3.1 | |
| with: | |
| python-version: "3.13" | |
| - name: Generate Matrix | |
| id: set-matrix | |
| shell: bash | |
| run: | | |
| matrix=$(uv run scripts/generate_matrix.py | jq -c) | |
| echo "matrix=$matrix" >> $GITHUB_OUTPUT | |
| typetest: | |
| needs: generate-matrix | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 3 | |
| strategy: | |
| fail-fast: false | |
| matrix: ${{ fromJSON(needs.generate-matrix.outputs.matrix) }} | |
| steps: | |
| - uses: actions/checkout@v4.2.2 | |
| - name: setup uv | |
| uses: astral-sh/setup-uv@v6.3.1 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: basedpyright | |
| run: > | |
| uv run | |
| -p ${{ matrix.python }} | |
| --with="numpy==${{ matrix.numpy }}" | |
| --active | |
| --no-editable | |
| basedpyright | |
| - name: mypy | |
| run: > | |
| uv run | |
| -p ${{ matrix.python }} | |
| --with="numpy==${{ matrix.numpy }}" | |
| --active | |
| --no-editable | |
| mypy | |
| --tb | |
| --hide-error-context | |
| --hide-error-code-links | |
| --no-incremental | |
| --cache-dir=/dev/null | |
| --soft-error-limit=-1 | |
| . | |
| - name: stubtest | |
| run: > | |
| uv run | |
| -p ${{ matrix.python }} | |
| --with="numpy==${{ matrix.numpy }}" | |
| --active | |
| --no-editable | |
| stubtest | |
| --allowlist=.mypyignore | |
| --mypy-config-file=pyproject.toml | |
| scipy |