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Update the labeling protocol with the straightened view #1

@jcohenadad

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@jcohenadad

Manual labeling of nerve rootlets needs to be robust. There is a large variability between scans and raters.

One way to facilitate the labeling is to straighten the scan:

Screen Shot 2021-12-10 at 5 26 42 PM

Other things to try:

  • in the straightened space, average in the AP direction (test the number of slices for optimal visualization of ventral and dorsal rootlets)
  • Include the PMJ in the straightened space. To do that, extend the centerline.

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