refs.bib

@article{love2014moderated,
  title={Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2},
  author={Love, Michael I and Huber, Wolfgang and Anders, Simon},
  journal={Genome biology},
  volume={15},
  number={12},
  pages={1--21},
  year={2014},
  doi={10.1186/s13059-014-0550-8},
  publisher={BioMed Central}
}

@article{muzellec2022pydeseq2,
  title={PyDESeq2: a python package for bulk RNA-seq differential expression analysis},
  author={Muzellec, Boris and Telenczuk, Maria and Cabeli, Vincent and Andreux, Mathieu},
  journal={bioRxiv},
  pages={2022--12},
  year={2022},
  doi={10.1101/2022.12.14.520412},
  publisher={Cold Spring Harbor Laboratory}
}

@article{zhu2019heavy,
  title={Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences},
  author={Zhu, Anqi and Ibrahim, Joseph G and Love, Michael I},
  journal={Bioinformatics},
  volume={35},
  number={12},
  pages={2084--2092},
  year={2019},
  doi={10.1093/bioinformatics/bty895},
  publisher={Oxford University Press}
}

@article{kuehlGeneCountEstimation2024b,
  title = {Gene Count Estimation with Pytximport Enables Reproducible Analysis of Bulk {{RNA}} Sequencing Data in {{Python}}},
  author = {Kuehl, Malte and Wong, Milagros N and Wanner, Nicola and Bonn, Stefan and Puelles, Victor G},
  year = {2024},
  journal = {Bioinformatics},
  volume = {40},
  number = {12},
  pages = {btae700},
  doi = {10.1093/bioinformatics/btae700},
  publisher = {Oxford University Press}
}