Write support for anndata-zarr v3 #251
Artur-manAnnotations
12 errors, 25 warnings, and 1 notice
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ubuntu-latest (release)
Process completed with exit code 1.
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ubuntu-latest (release)
Vignette re-building failed.
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ubuntu-latest (release)
processing vignette 'usage_seurat.Rmd' failed with diagnostics:
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ubuntu-latest (release)
processing vignette 'anndataR.Rmd' failed with diagnostics:
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ubuntu-latest (release)
--- re-building ‘anndataR.Rmd’ using rmarkdown
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macOS-15-intel (devel)
Only base data types (not extensions) are supported for Zarr v3 arrays for now
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macOS-15-intel (devel)
Process completed with exit code 1.
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ubuntu-latest (devel)
Only base data types (not extensions) are supported for Zarr v3 arrays for now
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ubuntu-latest (devel)
Process completed with exit code 1.
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macOS-latest (devel)
Process completed with exit code 1.
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windows-latest (devel)
Only base data types (not extensions) are supported for Zarr v3 arrays for now
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windows-latest (devel)
Process completed with exit code 1.
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ubuntu-latest (release)
vignette 'usage_python' not found
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macOS-15-intel (devel)
'::' or ':::' import not declared from: ‘jsonlite’
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macOS-15-intel (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.7:
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macOS-15-intel (devel)
unable to access index for repository https://bioconductor.posit.co//packages/3.23/books/bin/macosx/big-sur-x86_64/contrib/4.7:
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macOS-15-intel (devel)
unable to access index for repository https://bioconductor.posit.co//packages/3.23/workflows/bin/macosx/big-sur-x86_64/contrib/4.7:
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macOS-15-intel (devel)
unable to access index for repository https://bioconductor.posit.co//packages/3.23/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.7:
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macOS-15-intel (devel)
unable to access index for repository https://bioconductor.posit.co//packages/3.23/data/annotation/bin/macosx/big-sur-x86_64/contrib/4.7:
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macOS-15-intel (devel)
unable to access index for repository https://bioconductor.posit.co//packages/3.23/bioc/bin/macosx/big-sur-x86_64/contrib/4.7:
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macOS-15-intel (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.7:
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macOS-15-intel (devel)
gettext 1.0 is already installed and up-to-date.
To reinstall 1.0, run:
brew reinstall gettext
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ubuntu-latest (devel)
'::' or ':::' import not declared from: ‘jsonlite’
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macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/sonoma-arm64/contrib/4.7:
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macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/books/bin/macosx/sonoma-arm64/contrib/4.7:
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macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/workflows/bin/macosx/sonoma-arm64/contrib/4.7:
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macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/data/experiment/bin/macosx/sonoma-arm64/contrib/4.7:
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macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/data/annotation/bin/macosx/sonoma-arm64/contrib/4.7:
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macOS-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/bioc/bin/macosx/sonoma-arm64/contrib/4.7:
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macOS-latest (devel)
unable to access index for repository https://cran.rstudio.com/bin/macosx/sonoma-arm64/contrib/4.7:
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macOS-latest (devel)
gettext 1.0 is already installed and up-to-date.
To reinstall 1.0, run:
brew reinstall gettext
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windows-latest (devel)
'::' or ':::' import not declared from: 'jsonlite'
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windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/books/bin/windows/contrib/4.7:
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windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/workflows/bin/windows/contrib/4.7:
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windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/data/experiment/bin/windows/contrib/4.7:
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windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/data/annotation/bin/windows/contrib/4.7:
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windows-latest (devel)
unable to access index for repository https://bioconductor.org/packages/3.24/bioc/bin/windows/contrib/4.7:
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windows-latest (devel)
NOTICE: windows-2025 requests are being redirected to windows-2025-vs2026 by May 12, 2026
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Artifacts
Produced during runtime
| Name | Size | Digest | |
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Linux-X64-bioc-3.23-results
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2.86 MB |
sha256:ea65fb5eb948ab68497edb80d6c0a8c542a641ea3f3215fc5d1c85a9597ec7b8
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Windows-X64-bioc-3.24-results
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2.83 MB |
sha256:fde0426e30e452da0125fc43ed27b02e0545d239cdf122401782f8fcbf217d8e
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macOS-X64-bioc-3.23-results
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2.8 MB |
sha256:6cf49f8361ebf79af728deaaa08e3bb996dcabc498b6f3b0de6f1e32b59de6cd
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