anndataR/.github/workflows/pr-commands.yaml at 22a2191102282a69b23dbdb13e2b13dfe3159253 · scverse/anndataR · GitHub

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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
  issue_comment:
    types: [created]

name: pr-commands

permissions: read-all

jobs:
  document:
    if: ${{ github.event.issue.pull_request && (github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER' || github.event.comment.author_association == 'COLLABORATOR') && startsWith(github.event.comment.body, '/document') }}
    name: document
    runs-on: ubuntu-latest
    permissions:
      contents: write
    steps:
      - uses: actions/checkout@v6
        with:
          persist-credentials: false

      - uses: r-lib/actions/pr-fetch@v2
        with:
          repo-token: ${{ secrets.GITHUB_TOKEN }}

      - name: Setup R and Bioconductor
        uses: grimbough/bioc-actions/setup-bioc@v1
        with:
          bioc-version: devel

      - uses: r-lib/actions/setup-r-dependencies@v2
        with:
          extra-packages: any::roxygen2
          needs: pr-document

      - name: Document
        run: roxygen2::roxygenise()
        shell: Rscript {0}

      - name: commit
        run: |
          git config --local user.name "$GITHUB_ACTOR"
          git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com"
          git add man/\* NAMESPACE DESCRIPTION
          git commit -m 'Document (GHA)' || echo "No changes to commit"

      - uses: r-lib/actions/pr-push@v2
        with:
          repo-token: ${{ secrets.GITHUB_TOKEN }}

  style:
    if: ${{ github.event.issue.pull_request && (github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER' || github.event.comment.author_association == 'COLLABORATOR') && startsWith(github.event.comment.body, '/style') }}
    name: style
    runs-on: ubuntu-latest
    permissions:
      contents: write
    steps:
      - uses: actions/checkout@v6
        with:
          persist-credentials: false

      - uses: r-lib/actions/pr-fetch@v2
        with:
          repo-token: ${{ secrets.GITHUB_TOKEN }}

      - uses: r-lib/actions/setup-r@v2

      - name: Install air
        run: curl -LsSf https://github.com/posit-dev/air/releases/latest/download/air-installer.sh | sh

      - name: Install styler
        uses: r-lib/actions/setup-r-dependencies@v2
        with:
          packages: styler, roxygen2

      - name: Style code
        run: air format .

      - name: Style vignettes
        run: styler::style_dir("vignettes/")
        shell: Rscript {0}

      - name: Commit changes
        run: |
          if FILES_TO_COMMIT=($(git diff-index --name-only ${{ github.sha }} \
              | egrep --ignore-case '\.(R|[qR]md|Rmarkdown|Rnw|Rprofile)$'))
          then
            git config --local user.name "$GITHUB_ACTOR"
            git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com"
            git commit ${FILES_TO_COMMIT[*]} -m "Style code (GHA)"
          else
            echo "No changes to commit"
          fi

      - uses: r-lib/actions/pr-push@v2
        with:
          repo-token: ${{ secrets.GITHUB_TOKEN }}