Fixes for compatibility with anndata>=0.12.0#305
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Python anndata now stores an empty value instead of nothing
Conserve dimensions for 1D arrays
Allow disabling of writting null values for compatibility with anndata<0.12
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I still needed to updated the |
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Related to: Fixes #304
Description
Minor changes for compatibility with
anndata>=0.12.0(see scverse/anndata#2052):anndataused for tests to test against latest versionread_h5ad_null()helper functionwrite_h5ad_null()helper functionoption(anndataR.write_null = FALSE)disables writingNULLvalues for compatibility with reading usinganndata<0.12.0write_h5ad_string_array()where values were not transposed correctlyread_h5ad_dense_array()nonevalues in roundtrip testsChecklist
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