Update instance repo from cookiecutter template

Author: github-actions[bot]

.cruft.json

@@ -1,6 +1,6 @@
 {
   "template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-  "commit": "3f67b214a79e8e40e3012c63b1a89143d8ed13be",
+  "commit": "6517a421d3638beab5f03a6104b08eeac6325a48",
   "checkout": null,
   "context": {
     "cookiecutter": {
@@ -36,7 +36,7 @@
         "trim_blocks": true
       },
       "_template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-      "_commit": "3f67b214a79e8e40e3012c63b1a89143d8ed13be"
+      "_commit": "6517a421d3638beab5f03a6104b08eeac6325a48"
     }
   },
   "directory": null

.pre-commit-config.yaml

@@ -7,16 +7,16 @@ default_stages:
 minimum_pre_commit_version: 2.16.0
 repos:
   - repo: https://github.com/biomejs/pre-commit
-    rev: v2.4.6
+    rev: v2.4.8
     hooks:
       - id: biome-format
         exclude: ^\.cruft\.json$ # inconsistent indentation with cruft - file never to be modified manually.
   - repo: https://github.com/tox-dev/pyproject-fmt
-    rev: v2.16.2
+    rev: v2.20.0
     hooks:
       - id: pyproject-fmt
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.15.5
+    rev: v0.15.7
     hooks:
       - id: ruff-check
         types_or: [python, pyi, jupyter]