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[pre-commit.ci] auto fixes from pre-commit.com hooks
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1 parent a652053 commit 9188c90

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Lines changed: 4 additions & 3 deletions

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tests/mt/test_decouple.py

Lines changed: 4 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,8 @@
1-
import pytest
21
import tempfile
2+
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import anndata as ad
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import numpy as np
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import pytest
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import decoupler as dc
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@@ -20,7 +21,7 @@ def test_decouple(adata, net, methods, args, cons, anndata):
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if anndata:
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with tempfile.NamedTemporaryFile(suffix=".h5ad", delete=True) as tf:
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adata.write(tf.name)
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bdata = ad.read_h5ad(tf.name, backed='r')
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bdata = ad.read_h5ad(tf.name, backed="r")
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dc.mt.decouple(data=bdata, net=net, methods=methods, args=args, cons=cons, tmin=0)
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dc.mt.decouple(data=adata, net=net, methods=methods, args=args, cons=cons, tmin=0)
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if cons:
@@ -29,7 +30,7 @@ def test_decouple(adata, net, methods, args, cons, anndata):
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assert "score_consensus" not in adata.obsm
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assert set(adata.obsm).issubset(bdata.obsm)
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for k in adata.obsm:
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if 'waggr' not in k and 'consensus' not in k: # has different seed, cannot compare
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if "waggr" not in k and "consensus" not in k: # has different seed, cannot compare
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print(k)
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assert np.allclose(adata.obsm[k].values, bdata.obsm[k].values)
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else:

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