Updated CI

Author: PauBadiaM

.github/workflows/test.yaml

@@ -83,6 +83,8 @@ jobs:
         run: uvx hatch run ${{ matrix.env.name }}:coverage xml
       - name: Upload coverage
         uses: codecov/codecov-action@v4
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
 
   # Check that all tests defined above pass. This makes it easy to set a single "required" test in branch
   # protection instead of having to update it frequently. See https://github.com/re-actors/alls-green#why.

src/decoupler/mt/_aucell.py

@@ -64,7 +64,7 @@ def _func_aucell(
     n_up: int | float | None = None,
     verbose: bool = False,
 ) -> Tuple[np.ndarray, None]:
-    """
+    r"""
     Area Under the Curve for set enrichment within single cells (AUCell) :cite:`aucell`.
 
     Given a ranked list of features per observation, AUCell calculates the AUC by measuring how early the features in