File tree Expand file tree Collapse file tree
Expand file tree Collapse file tree Original file line number Diff line number Diff line change 1+ name : FlashDeconv
2+ description : |
3+ FlashDeconv is a high-performance spatial transcriptomics deconvolution method using
4+ structure-preserving randomized sketching. It estimates cell type proportions for
5+ atlas-scale and subcellular-resolution platforms (Visium HD, Stereo-seq, Xenium) with
6+ linear O(N) scaling - processing 1 million spots in ~3 minutes on commodity hardware.
7+ FlashDeconv provides a scanpy-compatible API (fd.tl.deconvolve) that stores results
8+ directly in AnnData objects, enabling seamless integration with the scverse ecosystem.
9+ project_home : https://github.com/cafferychen777/flashdeconv
10+ documentation_home : https://github.com/cafferychen777/flashdeconv#readme
11+ publications :
12+ - 10.64898/2025.12.22.696108
13+ install :
14+ pypi : flashdeconv
15+ license : GPL-3.0
16+ tags :
17+ - spatial transcriptomics
18+ - deconvolution
19+ - visium hd
20+ - cell type
21+ version : 0.1.2
22+ contact :
23+ - cafferychen777
24+ test_command : pip install ".[dev]" && pytest
25+ category : ecosystem
You can’t perform that action at this time.
0 commit comments