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Finalizing names #47

@ivirshup

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@ivirshup

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We should finalize naming for things. I'm starting a list here of things to resolve

  • GeneRangesFilter -> GeneRangeFilter (since it only takes a single range)
  • CanonicalFilter -> ???
  • genes(cols=...) -> genes(columns=...) – Just to be more consistent. Could go the other way and use cols everywhere.
  • What are the canonical strand names? +, - I assume?

Pushing to next release:

  • GeneRangeFilter + TxRangeFilter + ExonFilter or all one RangeFilter as done in bioconductor?
  • gf.ensembl.annotation Do we still want to call this an annotation? I named the function when the package was called genomic-annotations

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