napari-spatialdata/.github/workflows/test.yml at 273b19bdda7e4c4403f6cc5109b75f588754f83d · scverse/napari-spatialdata · GitHub

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# This workflows will upload a Python Package using Twine when a release is created
# For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries

name: tests

on:
  push:
    branches:
      - main
      - npe2
    tags:
      - "v*" # Push events to matching v*, i.e. v1.0, v20.15.10
  pull_request:
    branches:
      - main
      - npe2
  workflow_dispatch:

jobs:
  test:
    name: ${{ matrix.platform }} py${{ matrix.python-version }}
    runs-on: ${{ matrix.platform }}
    strategy:
      fail-fast: false
      matrix:
        platform: [ubuntu-latest, macos-latest] # [ubuntu-latest, windows-latest, macos-latest]
        python-version: ["3.11", "3.13"]

    steps:
      - uses: actions/checkout@v4

      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}

      # these libraries enable testing on Qt on linux
      - uses: tlambert03/setup-qt-libs@v1

      # strategy borrowed from vispy for installing opengl libs on windows
      - name: Install Windows OpenGL
        if: runner.os == 'Windows'
        run: |
          git clone --depth 1 https://github.com/pyvista/gl-ci-helpers.git
          powershell gl-ci-helpers/appveyor/install_opengl.ps1

      # note: if you need dependencies from conda, considering using
      # setup-miniconda: https://github.com/conda-incubator/setup-miniconda
      # and
      # tox-conda: https://github.com/tox-dev/tox-conda
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          python -m pip install setuptools tox tox-gh-actions

      # this runs the platform-specific tests declared in tox.ini
      - name: Test with tox
        uses: coactions/setup-xvfb@v1
        with:
          run: python -m tox
        env:
          PLATFORM: ${{ matrix.platform }}

      - name: Coverage
        uses: codecov/codecov-action@v5

      - name: Archive figures generated during testing
        if: always()
        uses: actions/upload-artifact@v4
        with:
          name: plotting-results-${{ matrix.python-version }}-${{ matrix.platform }}
          path: /Users/runner/work/napari-spatialdata/napari-spatialdata/tests/plots/generated/*

  test_benchmarks:
    name: test benchmarks
    runs-on: ubuntu-latest
    timeout-minutes: 60
    env:
      GIT_LFS_SKIP_SMUDGE: 1
    steps:
      - uses: actions/checkout@v4
        with:
          fetch-depth: 0
          ref: ${{ github.ref }}

      - uses: actions/setup-python@v5
        with:
          python-version: 3.11
          cache-dependency-path: pyproject.toml

      - name: Install dependencies with 'pre' extras (since the above doesn't check pre-releases)
        run: |
          python -m pip install --upgrade pip
          pip install .[pre]

      - uses: tlambert03/setup-qt-libs@v1

      - uses: octokit/request-action@v2.x
        # here we get hash of the latest release commit to compare with PR
        id: latest_release
        with:
          route: GET /repos/{owner}/{repo}/releases/latest
          owner: scverse
          repo: napari-spatialdata
        env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

      - name: install dependencies
        run: |
          pip install --upgrade pip
          pip install "asv[virtualenv]"
        env:
          PIP_CONSTRAINT: benchmarks/benchmark.txt

      - name: asv machine
        run: asv machine --yes

      - name: Run benchmarks PR
        uses: aganders3/headless-gui@v2
        with:
          run: |
            asv run --show-stderr --quick  --attribute timeout=300 HEAD^!
        env:
          PR: 1 # prevents asv from running very compute-intensive benchmarks
          PIP_CONSTRAINT: ${{ github.workspace }}/benchmarks/benchmark.txt

      - name: Fetch latest main
        run: git fetch origin main

      - name: Fetch latest release commit
        run: git fetch origin ${{ fromJSON(steps.latest_release.outputs.data).target_commitish }}

      - name: Ensure local main exists
        run: |
          CURRENT_BRANCH=$(git rev-parse --abbrev-ref HEAD)
          if [ "$CURRENT_BRANCH" != "main" ]; then
            git branch main origin/main
          fi

      - name: Run benchmarks latest release
        uses: aganders3/headless-gui@v2
        with:
          run: |
            asv run --show-stderr --quick --attribute timeout=300 ${{ fromJSON(steps.latest_release.outputs.data).target_commitish }}^!
        env:
          PR: 1 # prevents asv from running very compute-intensive benchmarks
          PIP_CONSTRAINT: ${{ github.workspace }}/benchmarks/benchmark.txt