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Issues list

Milo: annotate adata from mdata enhancement New feature or request
#751 opened Apr 26, 2025 by brainfo
@Zethson
2
milo mixed effect models enhancement New feature or request
#747 opened Apr 17, 2025 by liezeltamon
Move differential expression analysis to separate package enhancement New feature or request
#730 opened Mar 19, 2025 by grst
2
DIALOGUE v2 enhancement New feature or request
#723 opened Mar 6, 2025 by Zethson
4 tasks
Suggestion for a better layout of coda plot_boxplots() subplots enhancement New feature or request
#718 opened Feb 27, 2025 by shihsama
1
Milo neighborhood groups as in MiloR enhancement New feature or request
#680 opened Nov 21, 2024 by MaximilianNuber
1
Feature pertpy use-cases in our tutorial enhancement New feature or request
#642 opened Aug 19, 2024 by Zethson
@Lilly-May
1
possible to compute distances on a subset of genes? enhancement New feature or request
#640 opened Aug 14, 2024 by aterceros
@Zethson
3
Implement MiloDE (diff. expr. testing on top of milo framework) enhancement New feature or request
#635 opened Jul 30, 2024 by stefanpeidli
Update docs with new comparison metrics enhancement New feature or request
#630 opened Jun 24, 2024 by wxicu
FindConservedMarkers implementaion enhancement New feature or request
#629 opened Jun 22, 2024 by SNOL2
1
Improve DE tutorial enhancement New feature or request
#615 opened May 27, 2024 by grst
@Zethson
1
Add linear mixed effects model to DE interface enhancement New feature or request
#614 opened May 27, 2024 by grst
Parallelize DE methods that support it enhancement New feature or request
#613 opened May 27, 2024 by grst
HTML widget for DE Model classes enhancement New feature or request
#611 opened May 27, 2024 by grst
annotate_compounds for combinations of drugs enhancement New feature or request
#582 opened Apr 9, 2024 by MUCDK
@wxicu
2
Streamlining Distance API enhancement New feature or request
#416 opened Oct 31, 2023 by Zethson
@yugeji @Zethson
@stefanpeidli @tessadgreen @mojtababahrami @Lilly-May
5
Add statsmodels or pydeseq 2 support for milopy enhancement New feature or request
#175 opened Nov 7, 2022 by Zethson
3 tasks
@wxicu
2
Implement MCP methods enhancement New feature or request
#90 opened Dec 8, 2021 by Zethson
@yugeji @Zethson @mumichae
1
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