clarify space sep

flying-sheep · flying-sheep · commit f6b8598e13f5 · 2026-05-17T13:25:49.000+02:00
diff --git a/src/params/sam.rs b/src/params/sam.rs
@@ -87,7 +87,7 @@ impl clap::Args for OutSamType {
                 .default_values(["SAM"])
                 .help(
                     "Output type: SAM, BAM Unsorted, BAM SortedByCoordinate, None. \
-                     Provide as space-separated tokens, e.g. \"BAM SortedByCoordinate\".",
+                     Provide as space-separated tokens, e.g. `--outSAMtype BAM SortedByCoordinate`.",
                 ),
         )
     }
@@ -146,7 +146,7 @@ impl clap::Args for OutSamUnmapped {
                 .default_values(["None"])
                 .help(
                     "Unmapped reads in SAM output: None, Within, or Within KeepPairs. \
-                     Provide as space-separated tokens.",
+                     Provide as space-separated tokens, e.g. `--outSAMunmapped Within KeepPairs`.",
                 ),
         )
     }

Original file line number	Diff line number	Diff line change
`@@ -87,7 +87,7 @@ impl clap::Args for OutSamType {`
`87`	`87`	`.default_values(["SAM"])`
`88`	`88`	`.help(`
`89`	`89`	`"Output type: SAM, BAM Unsorted, BAM SortedByCoordinate, None. \`
`90`		`- Provide as space-separated tokens, e.g. \"BAM SortedByCoordinate\".",`
	`90`	+ Provide as space-separated tokens, e.g. `--outSAMtype BAM SortedByCoordinate`.",
`91`	`91`	`),`
`92`	`92`	`)`
`93`	`93`	`}`
`@@ -146,7 +146,7 @@ impl clap::Args for OutSamUnmapped {`
`146`	`146`	`.default_values(["None"])`
`147`	`147`	`.help(`
`148`	`148`	`"Unmapped reads in SAM output: None, Within, or Within KeepPairs. \`
`149`		`- Provide as space-separated tokens.",`
	`149`	+ Provide as space-separated tokens, e.g. `--outSAMunmapped Within KeepPairs`.",
`150`	`150`	`),`
`151`	`151`	`)`
`152`	`152`	`}`