Open
Description
@giovp, input 8 of the spatial integration tutorial currently looks like this:
adata_spatial = adata_spatial_anterior.concatenate(
adata_spatial_posterior,
batch_key="library_id",
uns_merge="unique",
batch_categories=[
k
for d in [
adata_spatial_anterior.uns["spatial"],
adata_spatial_posterior.uns["spatial"],
]
for k, v in d.items()
],
)
That batch_categories
expression is a little hard to read, and simplifies to: ['V1_Mouse_Brain_Sagittal_Anterior', 'V1_Mouse_Brain_Sagittal_Posterior'].
Is there a more simple way to do this? Maybe:
adata_spatial = adata_spatial_anterior.concatenate(
adata_spatial_posterior,
batch_key="library_id",
uns_merge="unique",
batch_categories=[
'V1_Mouse_Brain_Sagittal_Anterior',
'V1_Mouse_Brain_Sagittal_Posterior',
],
)
instead?