Ontology Update 20260108 #10
Workflow file for this run
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| name: Ontology CI/CD Pipeline | |
| on: | |
| release: | |
| types: [published] | |
| workflow_dispatch: # Manual trigger | |
| inputs: | |
| release_tag: | |
| description: 'Release tag to process (leave empty for latest)' | |
| required: false | |
| type: string | |
| jobs: | |
| # ============================================ | |
| # JOB 1: DOWNLOAD & VALIDATE | |
| # ============================================ | |
| validate: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: 🧾 Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: 📥 Download ontology from release | |
| run: | | |
| # Get release info | |
| if [ -n "${{ inputs.release_tag }}" ]; then | |
| RELEASE_TAG="${{ inputs.release_tag }}" | |
| echo "Using specified release: ${RELEASE_TAG}" | |
| RELEASE_URL="https://api.github.com/repos/${{ github.repository }}/releases/tags/${RELEASE_TAG}" | |
| else | |
| echo "Using latest release" | |
| RELEASE_URL="https://api.github.com/repos/${{ github.repository }}/releases/latest" | |
| fi | |
| # Get download URL for the ontology asset | |
| ASSET_URL=$(curl -s -H "Authorization: Bearer ${{ secrets.GITHUB_TOKEN }}" \ | |
| "${RELEASE_URL}" | \ | |
| jq -r '.assets[] | select(.name=="AREMA-ontology.ttl") | .browser_download_url') | |
| echo "📥 Downloading ontology from: ${ASSET_URL}" | |
| mkdir -p src/ontology | |
| curl -L -H "Authorization: Bearer ${{ secrets.GITHUB_TOKEN }}" \ | |
| "${ASSET_URL}" -o src/ontology/AREMA-ontology.ttl | |
| echo "✅ Ontology downloaded" | |
| ls -lh src/ontology/AREMA-ontology.ttl | |
| - name: 🐍 Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.12' | |
| - name: 📦 Install uv | |
| run: | | |
| curl -LsSf https://astral.sh/uv/install.sh | sh | |
| echo "$HOME/.cargo/bin" >> $GITHUB_PATH | |
| - name: 🔧 Sync Python environment | |
| run: uv sync --frozen | |
| - name: ✅ SHACL Validation | |
| run: | | |
| echo "🔍 Validating ontology with SHACL shapes..." | |
| uv run python tools/python/checks/shacl.py \ | |
| src/ontology/AREMA-ontology.ttl \ | |
| src/quality-checks/skohub.shacl.ttl | |
| echo "✅ Validation passed!" | |
| - name: 💾 Upload ontology artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: validated-ontology | |
| path: src/ontology/AREMA-ontology.ttl | |
| retention-days: 7 | |
| # ============================================ | |
| # JOB 2: BUILD DOCS & DEPLOY | |
| # ============================================ | |
| build-and-deploy: | |
| needs: validate | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write # Required to push docs back to repo | |
| steps: | |
| - name: 🧾 Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.repository.default_branch }} | |
| fetch-depth: 0 # Full history for proper git operations | |
| - name: 📥 Download validated ontology | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: validated-ontology | |
| path: src/ontology | |
| - name: 📚 Build Documentation | |
| run: | | |
| echo "🏗️ Generating documentation with SKOHub..." | |
| # Prepare environment | |
| mkdir -p docs | |
| echo "BASEURL=/" > .env | |
| echo "PATH_PREFIX=/" >> .env | |
| echo "GATSBY_BASE_PATH=/" >> .env | |
| # Preserve CNAME if it exists | |
| [ -f docs/CNAME ] && cp docs/CNAME /tmp/CNAME || true | |
| # Clear docs folder | |
| rm -rf docs/* | |
| # Create container with volume mounts for input only | |
| CONTAINER_ID=$(docker create \ | |
| -v $(pwd)/src/ontology:/app/data \ | |
| -v $(pwd)/.env:/app/.env \ | |
| -v $(pwd)/tools/skohub-vocabs/config.yaml:/app/config.yaml \ | |
| -v $(pwd)/tools/skohub-vocabs/src:/app/src/custom \ | |
| -v $(pwd)/tools/skohub-vocabs/static:/app/static/custom \ | |
| ghcr.io/sdsc-ordes/skohub-vocabs:v0.3.2 \ | |
| npm run build | |
| ) | |
| # Run build | |
| docker start -a $CONTAINER_ID | |
| # Copy output from container | |
| docker cp $CONTAINER_ID:/app/public/. ./docs/ | |
| # Cleanup | |
| docker rm $CONTAINER_ID | |
| # Restore CNAME | |
| [ -f /tmp/CNAME ] && mv /tmp/CNAME docs/CNAME || true | |
| echo "✅ Documentation generated!" | |
| - name: 💾 Commit Documentation | |
| run: | | |
| git config user.name "github-actions[bot]" | |
| git config user.email "github-actions[bot]@users.noreply.github.com" | |
| # Add only docs (not the ontology file) | |
| git add docs | |
| # Only commit if there are changes | |
| if ! git diff --cached --quiet; then | |
| RELEASE_TAG="${{ github.event.release.tag_name || inputs.release_tag || 'manual' }}" | |
| git commit -m "Update docs from release ${RELEASE_TAG} [skip ci]" | |
| git push origin ${{ github.event.repository.default_branch }} | |
| echo "✅ Documentation committed" | |
| else | |
| echo "ℹ️ No changes to commit" | |
| fi |