feat: remove a bunch of non-sensical stuff that developers and researchers don't care for to find their software

Author: rmfranken

src/imaging-ontology/ImagingOntology.ttl

@@ -25,11 +25,11 @@
     dct:creator "Robin Franken" ;
     dct:description "The Imaging Plaza ontology provides concepts (classes and properties) to model human and machine readable imaging software metadata. It is the result of re-using external pre-existing vocabularies such as schema.org and the software description ontology, together with custom imaging specific objects and properties. The ontology contains purely semantic information (labels, definitions etc.) and is meant to be used in conjuction with a graph of enumeration values and a graph containing SHACL shapes to provide more machine readable restrictions on values of properties." ;
     dct:license <https://spdx.org/licenses/CC-BY-SA-4.0.html> ;
-    dct:modified "2025-06-23"^^xsd:date ;
+    dct:modified "2025-10-02"^^xsd:date ;
     dct:title "Imaging Plaza Ontology" ;
     vann:preferredNamespacePrefix "imag" ;
     vann:preferredNamespaceUri "https://imaging-plaza.epfl.ch/ontology#"^^xsd:string ;
-    owl:versionInfo "1.0.4"^^xsd:string 
+    owl:versionInfo "1.1.0"^^xsd:string 
     .
 
 schema:SoftwareSourceCode
@@ -114,16 +114,8 @@ imag:relatedToOrganization a rdf:Property ;
   rdfs:comment "The lab/institution/group/project/organization to which a software is related and/or affiliated to" ;
   rdfs:label "Related to organization" .
 
-schema:familyName a rdf:Property;
-  rdfs:comment "Family name. In the U.S., the last name of a Person.";
-  rdfs:label "Family name" .
-
-schema:givenName a rdf:Property;
-  rdfs:comment "Given name. In the U.S., the first name of a Person.";
-  rdfs:label "Given name" .
-
 schema:name a rdf:Property;
-  rdfs:comment "The name of a person, in the US their first and last name(s) seperated by spaces";
+  rdfs:comment "The name of a thing or person.";
   rdfs:label "Name" .
 
 md4i:orcidId a rdf:Property ;
@@ -151,7 +143,7 @@ schema:softwareRequirements a rdf:Property;
   rdfs:label "Software requirements" .
 
 schema:softwareVersion a rdf:Property;
-  rdfs:comment "Version of the software instance.";
+  rdfs:comment "Version of the software instance expressed as x.x.x .";
   rdfs:label "Software version" .
 
 schema:url a rdf:Property;
@@ -162,14 +154,6 @@ schema:identifier a rdf:Property;
   rdfs:comment "Represents any kind of unique string to identify something, such as ISBNs, GTIN codes, UUIDs etc.";
   rdfs:label "Identifier" .
 
-schema:defaultValue a rdf:Property;
-  rdfs:comment "The default value of the input. For properties that expect a literal, the default is a literal value, for properties that expect an object, it's an ID reference to one of the current values.";
-  rdfs:label "Default value" .
-
-schema:valueRequired a rdf:Property;
-  rdfs:comment "Whether the property must be filled in to complete the action. Default is false.";
-  rdfs:label "Value required" .
-
 schema:supportingData a rdf:Property;
   rdfs:comment "Supporting data for a SoftwareApplication.";
   rdfs:label "Supporting data" .
@@ -178,10 +162,6 @@ schema:distribution a rdf:Property;
   rdfs:comment "A downloadable form of this dataset, at a specific location, in a specific format." ;
   rdfs:label "Distribution" .
 
-schema:encodingFormat a rdf:Property;
-  rdfs:comment "Expressed using a MIME format (http://www.iana.org/assignments/media-types/media-types.xhtml).";
-  rdfs:label "Encoding format" .
-
 schema:measurementTechnique a rdf:Property;
   rdfs:comment "A technique or technology used in a Dataset corresponding to the method used for measuring the corresponding variable(s)." ;
   rdfs:label "Measurement technique" .
@@ -206,18 +186,6 @@ schema:processorRequirements a rdf:Property;
   rdfs:comment "Processor architecture required to run the application.";
   rdfs:label "Processor requirements" .
 
-sd:hasInput a rdf:Property;
-  rdfs:comment "Property that links a model configuration to the input types expected by it."@en;
-  rdfs:label "Has input"@en .
-
-sd:hasOutput a rdf:Property;
-  rdfs:comment "Property that expresses what the outputs of a model are"@en;
-  rdfs:label "Has output"@en .
-
-sd:hasParameter a rdf:Property;
-  rdfs:comment "Property that indicates the parameters of a model configuration"@en;
-  rdfs:label "Has parameter"@en .
-
 sd:hasFunding a rdf:Property;
   rdfs:comment "Property that links a software project to its funding information"@en;
   rdfs:label "Has funding information"@en .
@@ -257,10 +225,6 @@ sd:fundingGrant a rdf:Property;
   rdfs:label "Funding grant"@en;
   rdfs:subPropertyOf <https://codemeta.github.io/terms/funding> .
 
-sd:hasFormat a rdf:Property;
-  rdfs:comment "Format followed by a file. For example, txt, nc, etc."@en;
-  rdfs:label "Has format"@en .
-
 sd:availableInRegistry a rdf:Property;
   rdfs:comment "URL to registry of where software image can be found. For example, https://hub.docker.com/r/pytorch/pytorch"@en;
   rdfs:label "Available in registry"@en .
@@ -355,12 +319,7 @@ sd:DatasetSpecification a rdfs:Class ;
     rdfs:label "Dataset Specification"@en ;
     .
 
-bio:FormalParameter a rdfs:Class ;
-    rdfs:subClassOf <http://purl.org/linked-data/cube#DataStructureDefinition> ;
-    rdfs:comment "A FormalParameter is an identified variable used to stand for the actual value(s) that are consumed/produced by a set of steps"@en ;
-    rdfs:label "Formal Parameter"@en ;
 
-    .
 imag:ExecutableNotebook a rdfs:Class ;
     rdfs:comment "An object representing an executable notebook such as Jupyter Notebook" ;
     rdfs:label "Executable Notebook"@en ;

src/imaging-ontology/ImagingOntologyEnumeration.ttl

@@ -66,7 +66,7 @@ imag:UZH a imag:AffiliationEnum ;
 .
 
 imag:NoneAffiliation a imag:AffiliationEnum ;
-    rdfs:label "None" ;
+    rdfs:label "No affiliation" ;
 .
 
 imag:IsPluginModuleOfEnum a rdfs:Class ;
@@ -99,10 +99,6 @@ imag:Pyxu a imag:IsPluginModuleOfEnum ;
     rdfs:label "pyxu" ;
 .
 
-imag:NonePluginModule a imag:IsPluginModuleOfEnum ;
-    rdfs:label "None" ;
-.
-
 imag:ApplicationCategoryEnum a rdfs:Class ;
     rdfs:comment "Enumeration class for application category" ;
     rdfs:label "Application Category Enumeration" ;
@@ -174,7 +170,7 @@ imag:MacOS a imag:OperatingSystemEnum ;
 .
 
 imag:OtherOS a imag:OperatingSystemEnum ;
-    rdfs:label "Other" ;
+    rdfs:label "Other OS" ;
 .
 
 imag:ProcessorRequirementsEnum a rdfs:Class ;
@@ -192,7 +188,7 @@ imag:AMD64 a imag:ProcessorRequirementsEnum ;
 .
 
 imag:NoneProcessorRequirement a imag:ProcessorRequirementsEnum ;
-    rdfs:label "None" ;
+    rdfs:label "No processor requirements" ;
 .
 
 imag:FeatureEnum a rdfs:Class ;
@@ -533,7 +529,7 @@ imag:CUDA_9_0 a imag:SoftwareRequirementsEnum ;
 .
 
 imag:NoneSoftwareRequirement a imag:SoftwareRequirementsEnum ;
-    rdfs:label "None" ;
+    rdfs:label "No software requirements" ;
 .
 
 imag:ComputerLanguageEnum a rdfs:Class ;
@@ -618,7 +614,7 @@ imag:Wasm a imag:HostTypeEnumeration ;
 
 
 imag:OtherHostType a imag:HostTypeEnumeration ;
-    rdfs:label "Other" ;
+    rdfs:label "Other host type" ;
     .
 
 imag:DatasetFormatEnumeration a rdfs:Class ;
@@ -668,5 +664,5 @@ imag:RAW a imag:DatasetFormatEnumeration ;
 .
 
 imag:OtherDatasetFormat a imag:DatasetFormatEnumeration ;
-    rdfs:label "Other" ;
+    rdfs:label "Other format" ;
 .

src/imaging-ontology/ImagingOntologyShapes.ttl

@@ -94,10 +94,6 @@ prefix skos: <http://www.w3.org/2004/02/skos/core#>
     sh:description "This shape defines the requirements for a software to be considered FAIR level 4 compliant. It builds upon level 3 and adds more detailed metadata and requirements." ;
     sh:targetClass schema:SoftwareSourceCode ;
         sh:property 
-        [sh:path schema:memoryRequirements ;
-        sh:minCount 1;
-        sh:message "Fair level 4"] ,
-        
         [sh:path sd:hasDocumentation ;
         sh:minCount 1;
         sh:message "Fair level 4"] ,
@@ -168,7 +164,6 @@ sh:property schema:SoftwareApplication-applicationCategory ,
               sd:SoftwareApplication-hasDocumentation ,
               sd:SoftwareApplication-hasExecutableInstructions ,
               imag:SoftwareApplication-hasExecutableNotebook ,
-              sd:SoftwareApplication-hasParameter ,
               sd:SoftwareApplication-readme ,
               sd:SoftwareApplication-hasFunding ,
               sd:SoftwareConfiguration-hasSoftwareImage ,
@@ -367,20 +362,6 @@ a sh:NodeShape ;
   sh:property schema:Person-affiliation 
 .
 
-schema:Person-familyName
-  a sh:PropertyShape ;
-  sh:path schema:familyName ;
-  sh:datatype xsd:string ;
-  sh:minCount 1 ;
-  .
-
-schema:Person-givenName
-  a sh:PropertyShape ;
-  sh:path schema:givenName ;
-  sh:datatype xsd:string ;
-  sh:minCount 1 ;
-.
-
 md4i:orcidIdShape
   a sh:PropertyShape ;
   sh:path md4i:orcidId ;
@@ -402,17 +383,15 @@ sh:property md4i:hasRorIdShape ;
 schema:SoftwareApplication-memoryRequirements
   a sh:PropertyShape ;
   sh:path schema:memoryRequirements ;
-  sh:or (
-    [sh:datatype xsd:string ]
-    [sh:hasValue "None"])
+  sh:datatype xsd:integer ;
 .
 
 schema:Thing-name
   a sh:PropertyShape ;
   sh:path schema:name ;
   sh:datatype xsd:string ;
   sh:minCount 1 ;
-  sh:maxLength 60
+  sh:maxLength 120
 .
 
 schema:SoftwareApplication-operatingSystem
@@ -478,12 +457,6 @@ imag:SoftwareApplication-hasExecutableNotebook
     sh:class imag:ExecutableNotebook ;
     .
 
-sd:SoftwareApplication-hasParameter
-    a sh:PropertyShape ;
-    sh:path sd:hasParameter ;
-    sh:class bio:FormalParameter ;
-    .
-
 sd:SoftwareApplication-readme
     a sh:PropertyShape ;
     sh:path sd:readme ;
@@ -577,49 +550,12 @@ sd:FundingInformation
                 sd:FundingInformation-fundingSource ;
     .
 
-
-
-bio:FormalParameter
-    a sh:NodeShape ;
-    sh:property schema:Thing-description ,
-                schema:CreativeWork-encodingFormat,
-                schema:Thing-name,
-                sd:DatasetSpecification-hasDimensionality,
-                sd:DatasetSpecification-hasFormat ,
-                schema:PropertyValueSpecification-defaultValue,
-                schema:PropertyValueSpecification-valueRequired
-    .
-
-schema:CreativeWork-encodingFormat
-  a sh:PropertyShape ;
-  sh:path schema:encodingFormat ;
-  sh:pattern ".*iana.org/assignments/media-types/.*" ;
-.
-
 sd:DatasetSpecification-hasDimensionality
     a sh:PropertyShape ;
     sh:path sd:hasDimensionality ;
     sh:datatype xsd:integer ;
     .
 
-sd:DatasetSpecification-hasFormat
-    a sh:PropertyShape ;
-    sh:path sd:hasFormat ;
-    sh:datatype xsd:string ;
-    .
-
-schema:PropertyValueSpecification-defaultValue
-  a sh:PropertyShape ;
-  sh:path schema:defaultValue ;
-  sh:datatype xsd:string ;
-.
-
-schema:PropertyValueSpecification-valueRequired
-  a sh:PropertyShape ;
-  sh:path schema:valueRequired ;
-  sh:datatype xsd:boolean ;
-.
-
 sd:SoftwareConfiguration-hasSoftwareImage
     a sh:PropertyShape ;
     sh:path sd:hasSoftwareImage ;
@@ -640,7 +576,8 @@ imag:ExecutableNotebook a sh:NodeShape ;
 
 imag:RunnableExample
   a sh:NodeShape ;
-  sh:property schema:Thing-description ,
+  sh:property schema:SoftwareApplication-softwareVersion ,
+              schema:Thing-description ,
               schema:Thing-url ,
               schema:Thing-name ,
               imag:hostTypeShape