Could problemPage also check workflow packages?

[lcolladotor]

Hi,

Would it be possible for problemPage() to also check workflow packages?

As of today (2018-11-16), problemPage() doesn't detect any errors with my packages, but I just got an email from @lshep about the recountWorkflow package that I maintain:

Hello workflow maintainer, 


Your current workflow is failing in Bioconductor 

http://bioconductor.org/checkResults/3.9/workflows-LATEST/recountWorkflow/malbec2-buildsrc.html


Please investigate this ERROR.  

Thanks,
Leo

Info today

> library('BiocPkgTools')
Loading required package: htmlwidgets
> problemPage('Collado', ver = '3.8')
Error in problemPage("Collado", ver = "3.8") : all packages fine
> problemPage('Collado', ver = '3.9')
Error in problemPage("Collado", ver = "3.9") : all packages fine
> options(width = 120)
> sessioninfo::session_info()
─ Session info ───────────────────────────────────────────────────────────────────────────────────────────────────────
 setting  value
 version  R version 3.5.1 (2018-07-02)
 os       macOS Mojave 10.14.1
 system   x86_64, darwin15.6.0
 ui       X11
 language (EN)
 collate  en_US.UTF-8
 ctype    en_US.UTF-8
 tz       America/New_York
 date     2018-11-16

─ Packages ───────────────────────────────────────────────────────────────────────────────────────────────────────────
 package      * version date       lib source
 assertthat     0.2.0   2017-04-11 [1] CRAN (R 3.5.0)
 bindr          0.1.1   2018-03-13 [1] CRAN (R 3.5.0)
 bindrcpp       0.2.2   2018-03-29 [1] CRAN (R 3.5.0)
 BiocManager    1.30.3  2018-10-10 [1] CRAN (R 3.5.0)
 BiocPkgTools * 1.0.1   2018-11-05 [1] Bioconductor
 cli            1.0.1   2018-09-25 [1] CRAN (R 3.5.0)
 colorout     * 1.2-0   2018-05-03 [1] Github (jalvesaq/colorout@c42088d)
 crayon         1.3.4   2017-09-16 [1] CRAN (R 3.5.0)
 curl           3.2     2018-03-28 [1] CRAN (R 3.5.0)
 digest         0.6.18  2018-10-10 [1] CRAN (R 3.5.0)
 dplyr          0.7.8   2018-11-10 [1] CRAN (R 3.5.0)
 DT             0.5     2018-11-05 [1] CRAN (R 3.5.0)
 glue           1.3.0   2018-07-17 [1] CRAN (R 3.5.0)
 hms            0.4.2   2018-03-10 [1] CRAN (R 3.5.0)
 htmltools      0.3.6   2017-04-28 [1] CRAN (R 3.5.0)
 htmlwidgets  * 1.3     2018-09-30 [1] CRAN (R 3.5.0)
 httr           1.3.1   2017-08-20 [1] CRAN (R 3.5.0)
 igraph         1.2.2   2018-07-27 [1] CRAN (R 3.5.0)
 jsonlite       1.5     2017-06-01 [1] CRAN (R 3.5.0)
 lazyeval       0.2.1   2017-10-29 [1] CRAN (R 3.5.0)
 magrittr       1.5     2014-11-22 [1] CRAN (R 3.5.0)
 pillar         1.3.0   2018-07-14 [1] CRAN (R 3.5.0)
 pkgconfig      2.0.2   2018-08-16 [1] CRAN (R 3.5.0)
 purrr          0.2.5   2018-05-29 [1] CRAN (R 3.5.0)
 R6             2.3.0   2018-10-04 [1] CRAN (R 3.5.0)
 Rcpp           1.0.0   2018-11-07 [1] CRAN (R 3.5.0)
 readr          1.1.1   2017-05-16 [1] CRAN (R 3.5.0)
 rex            1.1.2   2017-10-19 [1] CRAN (R 3.5.0)
 rlang          0.3.0.1 2018-10-25 [1] CRAN (R 3.5.0)
 rvest          0.3.2   2016-06-17 [1] CRAN (R 3.5.0)
 sessioninfo    1.1.1   2018-11-05 [1] CRAN (R 3.5.0)
 stringi        1.2.4   2018-07-20 [1] CRAN (R 3.5.0)
 stringr        1.3.1   2018-05-10 [1] CRAN (R 3.5.0)
 tibble         1.4.2   2018-01-22 [1] CRAN (R 3.5.0)
 tidyr          0.8.2   2018-10-28 [1] CRAN (R 3.5.0)
 tidyselect     0.2.5   2018-10-11 [1] CRAN (R 3.5.0)
 withr          2.1.2   2018-03-15 [1] CRAN (R 3.5.0)
 xml2           1.2.0   2018-01-24 [1] CRAN (R 3.5.0)

[1] /Library/Frameworks/R.framework/Versions/3.5devel/Resources/library
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