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Alison Morse
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AMM added link to gouviea ref for kelsey
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galaxy/meta_analysis.xml

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@@ -56,8 +56,11 @@ This meta-analysis tool uses metafor (Meta-Analysis Package for R (Viechtbauer,
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We note that the version wrapped here has been tested using the standardized mean difference (SMD) to estimate the effect size, unbiased estimates
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of the sampling variance (UB) and a fixed effects (FE) model.
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More details about the Metafor package can be found here:
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https://www.biorxiv.org/content/10.1101/2021.03.24.436834v1
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Viechtbauer, W. (2010). Conducting meta-analyses in R with the metafor package. Journal of Statistical Software, 36(3), 1-48. https://doi.org/10.18637/jss.v036.i03
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@@ -99,12 +102,11 @@ This tool outputs two different files:
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- featureID
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- effect - calculated effect size (Standard Mean Difference between the experimental and control treatments)
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- se - corresponding standard errors
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- z_value - test statistics
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- p_value
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- ci_low - lower bounds of confidence intervals
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- ci_upper - upper bounds of confidence intervals
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- se - standard errors of the coefficients
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- z_value - test statistics of the coefficients
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- p_value - p-values for test statistics
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- ci_low - lower bound of confidence intervals
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- ci_upper - upper bound of confidence intervals
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(2) a report file that contains a description of how much variability and heterogeneity has been calculated for each sample, and what the results of the fixed effects model were.

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