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docs: 📝 update README and other general details from template
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‎.copier-answers.yml‎

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# Changes here will be overwritten by Copier; NEVER EDIT MANUALLY
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_commit: 0.17.10
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_src_path: gh:seedcase-project/template-website
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author_family_name: Johnston
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author_given_name: Luke
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github_board_number: '18'
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github_repo: guidebook
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github_user: seedcase-project
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hosting_provider: netlify
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is_seedcase_website: true
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review_team: '@seedcase-project/developers'

‎.zenodo.json‎

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{
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"creators": [
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{
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"name": "Johnston, Luke",
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"affiliation": "Steno Diabetes Center Aarhus",
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"orcid": "https://orcid.org/0000-0003-4169-2616"
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},
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{
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"name": "Brødbæk, Signe Kirk",
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"affiliation": "Steno Diabetes Center Aarhus",
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"orcid": "https://orcid.org/0009-0000-2208-7088"
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},
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{
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"name": "Beicher, Kristiane",
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"affiliation": "Steno Diabetes Center Aarhus",
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"orcid": "https://orcid.org/0000-0001-7556-9566"
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},
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{
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"name": "Vago, Marton",
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"affiliation": "Steno Diabetes Center Aarhus",
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"orcid": "https://orcid.org/0009-0007-4628-655X"
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}
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],
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"title": "Guidebook to doing research software engineering in a team-setting",
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"description": "This repository documents the practices, guidelines, and conventions that we've learned and applied that help us develop and release research software more effectively as solo developers and as a team. See our website at https://guidebook.seedcase-project.org/ for more details.",
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"access_right": "open",
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"related_identifiers": [
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{
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"identifier": "https://github.com/seedcase-project/guidebook",
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"relation": "isIdenticalTo",
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"resource_type": "other"
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}
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],
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"keywords": [
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"quarto website",
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"guidebook",
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"research software engineering",
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"teamwork",
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"best practices",
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"collaboration"
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],
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"license": "cc-by-4.0",
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"upload_type": "publication",
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"publication_type": "other",
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"language": "eng"
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}

‎404.qmd‎

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---
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title: "You’ve entered the garden of missing pages"
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title: "You've entered the garden of missing pages"
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---
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Let's get you back to greener grounds.

‎README.md‎

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# Guidebook
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[![pre-commit.ci status](https://results.pre-commit.ci/badge/github/seedcase-project/seedcase-sprout/main.svg)](https://results.pre-commit.ci/latest/github/seedcase-project/seedcase-sprout/main)
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This repo is ...
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# guidebook: Doing research software engineering in a team-setting
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<!-- TODO: Include DOI after uploading -->
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[![Copier](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/copier-org/copier/master/img/badge/badge-grayscale-inverted-border-teal.json?raw=true.svg)](https://github.com/copier-org/copier)
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[![GitHub
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License](https://img.shields.io/github/license/seedcase-project/guidebook.svg)](https://github.com/seedcase-project/guidebook/blob/main/LICENSE.md)
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[![GitHub
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Release](https://img.shields.io/github/v/release/seedcase-project/guidebook.svg)](https://github.com/seedcase-project/guidebook/releases/latest)
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[![Build
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website](https://github.com/seedcase-project/guidebook/actions/workflows/build-website.yml/badge.svg)](https://github.com/seedcase-project/guidebook/actions/workflows/build-website.yml)
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[![pre-commit.ci
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status](https://results.pre-commit.ci/badge/github/seedcase-project/guidebook/main.svg)](https://results.pre-commit.ci/latest/github/seedcase-project/guidebook/main)
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[![lifecycle](https://lifecycle.r-lib.org/articles/figures/lifecycle-experimental.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
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[![Project Status: WIP – Initial development is in progress, but there
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has not yet been a stable, usable release suitable for the
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public.](https://www.repostatus.org/badges/latest/wip.svg)](https://www.repostatus.org/#wip)
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<!-- [![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active) -->
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This repository documents the practices, guidelines, and conventions
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that we’ve learned and applied that help us develop and release research
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software more effectively as solo developers and as a team.
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> [!TIP]
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>
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> This website repository was generated from the
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> [`template-website`](https://github.com/seedcase-project/template-website)
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> Seedcase template :tada:
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## Project files and folders
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- `.copier-answers.yml`: Contains the answers you gave when copying the
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project from the template. **You should not modify this file
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directly.**
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- `.cz.toml`:
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[Commitizen](https://commitizen-tools.github.io/commitizen/)
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configuration file for managing versions and changelogs.
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- `.pre-commit-config.yaml`: [Pre-commit](https://pre-commit.com/)
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configuration file for managing and running checks before each commit.
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- `.typos.toml`: [typos](https://github.com/crate-ci/typos) spell
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checker configuration file.
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- `.zenodo.json`: Structured citation metadata for your project when
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archived on [Zenodo](https://zenodo.org/). This is used to add the
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metadata to Zenodo when a GitHub release has been uploaded to Zenodo.
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- `justfile`: [`just`](https://just.systems/man/en/) configuration file
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for scripting project tasks.
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- `.editorconfig`: Editor configuration file for
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[EditorConfig](https://editorconfig.org/) to maintain consistent
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coding styles across different editors and IDEs.
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- `CHANGELOG.md`: Changelog file for tracking changes in the project.
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- `CONTRIBUTING.md`: Guidelines for contributing to the project.
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- `.github/`: Contains GitHub-specific files, such as issue and pull
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request templates, workflows,
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[dependabot](https://docs.github.com/en/code-security/getting-started/dependabot-quickstart-guide)
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configuration, pull request templates, and a
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[CODEOWNERS](https://docs.github.com/en/repositories/managing-your-repositorys-settings-and-features/customizing-your-repository/about-code-owners)
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file.
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- `_metadata.yml`: Quarto metadata file for the website, including
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information about the project, such as the titles and GitHub names.
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- `_quarto.yml`: Quarto configuration file for the website, including
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settings for the website, such as the theme, navigation, and other
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options.
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## Contributing
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Check out our [contributing document](CONTRIBUTING.md) for information
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on how to contribute to the project, including how to set up your
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development environment.
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Please note that this project is released with a [Contributor Code of
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Conduct](CODE_OF_CONDUCT.md). By participating in this project you agree
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to abide by its terms.
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### Contributors
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The following people have contributed to this project by submitting pull
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requests :tada:
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[@lwjohnst86](https://github.com/lwjohnst86),
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[@signekb](https://github.com/signekb)
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## Licensing
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This project is licensed under the [CC-BY-4.0 License](LICENSE.md).
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## Changelog
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For a list of changes, see our [changelog](CHANGELOG.md) page.

‎README.qmd‎

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---
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format: gfm
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metadata-files:
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- _metadata.yml
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---
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# {{< meta gh.repo >}}: Doing research software engineering in a team-setting
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{{< include /includes/_badges.qmd >}}
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This repository documents the practices, guidelines, and conventions
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that we've learned and applied that help us develop and release research
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software more effectively as solo developers and as a team.
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::: callout-tip
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This website repository was generated from the
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[`template-website`](https://github.com/seedcase-project/template-website)
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Seedcase template :tada:
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:::
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## Project files and folders
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- `.copier-answers.yml`: Contains the answers you gave when copying
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the project from the template. **You should not modify this file
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directly.**
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- `.cz.toml`:
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[Commitizen](https://commitizen-tools.github.io/commitizen/)
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configuration file for managing versions and changelogs.
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- `.pre-commit-config.yaml`: [Pre-commit](https://pre-commit.com/)
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configuration file for managing and running checks before each
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commit.
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- `.typos.toml`: [typos](https://github.com/crate-ci/typos) spell
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checker configuration file.
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- `.zenodo.json`: Structured citation metadata for your project when
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archived on [Zenodo](https://zenodo.org/). This is used to add the
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metadata to Zenodo when a GitHub release has been uploaded to
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Zenodo.
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- `justfile`: [`just`](https://just.systems/man/en/) configuration
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file for scripting project tasks.
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- `.editorconfig`: Editor configuration file for
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[EditorConfig](https://editorconfig.org/) to maintain consistent
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coding styles across different editors and IDEs.
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- `CHANGELOG.md`: Changelog file for tracking changes in the project.
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- `CONTRIBUTING.md`: Guidelines for contributing to the project.
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- `.github/`: Contains GitHub-specific files, such as issue and pull
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request templates, workflows,
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[dependabot](https://docs.github.com/en/code-security/getting-started/dependabot-quickstart-guide)
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configuration, pull request templates, and a
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[CODEOWNERS](https://docs.github.com/en/repositories/managing-your-repositorys-settings-and-features/customizing-your-repository/about-code-owners)
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file.
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- `_metadata.yml`: Quarto metadata file for the website, including
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information about the project, such as the titles and GitHub names.
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- `_quarto.yml`: Quarto configuration file for the website, including
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settings for the website, such as the theme, navigation, and other
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options.
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## Contributing
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Check out our [contributing document](CONTRIBUTING.md) for information
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on how to contribute to the project, including how to set up your
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development environment.
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Please note that this project is released with a [Contributor Code of
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Conduct](CODE_OF_CONDUCT.md). By participating in this project you agree
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to abide by its terms.
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### Contributors
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{{< include /includes/_contributors.qmd >}}
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## Licensing
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This project is licensed under the [CC-BY-4.0 License](LICENSE.md).
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## Changelog
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For a list of changes, see our [changelog](CHANGELOG.md) page.

‎_metadata.yml‎

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gh:
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repo: guidebook
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org: seedcase-project

‎_quarto.yml‎

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book:
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title: "Guidebook to doing research software engineering in a team-setting"
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subtitle: "A living document for how we work in the Seedcase project"
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subtitle: "A living document for how we work and build things in the Seedcase project"
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search:
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type: textbox
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favicon: _extensions/seedcase-project/seedcase-theme/favicon/favicon.ico
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author:
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- "Luke W. Johnston"
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- "Signe Kirk Brødbæk"
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- "Kristiane Beicher"
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- "Marton Vago"
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- name: "Luke W. Johnston"
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affiliation: "Steno Diabetes Center Aarhus"
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orcid: "https://orcid.org/0000-0003-4169-2616"
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- name: "Signe Kirk Brødbæk"
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affiliation: "Steno Diabetes Center Aarhus"
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orcid: "https://orcid.org/0009-0000-2208-7088"
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- name: "Kristiane Beicher"
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affiliation: "Steno Diabetes Center Aarhus"
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orcid: "https://orcid.org/0000-0001-7556-9566"
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- name: "Marton Vago"
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affiliation: "Steno Diabetes Center Aarhus"
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orcid: "https://orcid.org/0009-0007-4628-655X"
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date: last-modified
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repo-url: "https://github.com/seedcase-project/guidebook"
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site-url: "https://guidebook.seedcase-project.org/"

‎includes/_badges.qmd‎

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<!-- TODO: Include DOI after uploading -->
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[![Copier](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/copier-org/copier/master/img/badge/badge-grayscale-inverted-border-teal.json?raw=true.svg)](https://github.com/copier-org/copier)
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[![GitHub License](https://img.shields.io/github/license/{{< meta gh.org >}}/{{< meta gh.repo >}}.svg)](https://github.com/{{< meta gh.org >}}/{{< meta gh.repo >}}/blob/main/LICENSE.md)
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[![GitHub Release](https://img.shields.io/github/v/release/{{< meta gh.org >}}/{{< meta gh.repo >}}.svg)](https://github.com/{{< meta gh.org >}}/{{< meta gh.repo >}}/releases/latest)
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[![Build website](https://github.com/{{< meta gh.org >}}/{{< meta gh.repo >}}/actions/workflows/build-website.yml/badge.svg)](https://github.com/{{< meta gh.org >}}/{{< meta gh.repo >}}/actions/workflows/build-website.yml)
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[![pre-commit.ci status](https://results.pre-commit.ci/badge/github/{{< meta gh.org >}}/{{< meta gh.repo >}}/main.svg)](https://results.pre-commit.ci/latest/github/{{< meta gh.org >}}/{{< meta gh.repo >}}/main)
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[![lifecycle](https://lifecycle.r-lib.org/articles/figures/lifecycle-experimental.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
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[![Project Status: WIP – Initial development is in progress, but there has not yet been a stable, usable release suitable for the public.](https://www.repostatus.org/badges/latest/wip.svg)](https://www.repostatus.org/#wip)
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<!-- [![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active) -->

‎includes/_contributors.qmd‎

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The following people have contributed to this project by submitting pull requests :tada:
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[\@lwjohnst86](https://github.com/lwjohnst86), [\@signekb](https://github.com/signekb)

‎index.qmd‎

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# Welcome!
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{{< include /includes/_badges.qmd >}}
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Guidebook is about...
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## Who you are as the reader
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- **Research software/data engineers**: ...
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- **Managers or leaders**: ...
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- **Research or development operations personnel**: ...
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## Contributing
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Check out our [contributing document](CONTRIBUTING.md) for information
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on how to contribute to the project.
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### Contributors
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{{< include /includes/_contributors.qmd >}}
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## Changes
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Check out our [changelog](CHANGELOG.md) for information on what has
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changed in each version of the guidebook.

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