smithery.yaml

name: neuroghost
displayName: NeuroGhost
description: >
  A shared vocabulary registry for neuroscience data. Search concepts across
  schemas (BIDS, NWB, DANDI, BBQS, openMINDS, AIND), compare schemas, transform
  data records between formats, and submit new schemas — all via MCP tools.
version: 1.0.0
license: CC0-1.0
homepage: https://sensein.group/NeuroGhost/
repository: https://github.com/sensein/NeuroGhost

startCommand:
  type: stdio
  configSchema:
    type: object
    properties:
      registry_url:
        type: string
        description: >
          Override the registry JSON URL. Defaults to the live GitHub Pages
          endpoint. Set to a local file path (file:///...) when running offline
          with a local registry.json.
        default: "https://sensein.group/NeuroGhost/data/registry.json"
  commandFunction: |-
    (config) => ({
      command: "python",
      args: ["-m", "neuro_ghost.mcp_server"],
      env: config.registry_url
        ? { NEUROGHOST_REGISTRY_URL: config.registry_url }
        : {}
    })

tools:
  - name: list_sources
    description: List all registered neuroscience schema sources with class counts.
  - name: search_classes
    description: Search for classes by name or definition, optionally filtered by schema.
  - name: get_class
    description: Get full class detail — properties, alignments, IRI, sources.
  - name: get_alignments
    description: Find classes aligned to a given class across all registered schemas.
  - name: diff_schemas
    description: Compare two schemas — overlapping and unique classes.
  - name: transform_record
    description: Map a data record from one schema format to another using alignment.
  - name: get_provenance
    description: Get the registry changelog — every schema ingestion and version bump.
  - name: ingest_schema
    description: Submit a new LinkML schema to the registry via GitHub issue.