🔥 remove(cellprofiler): drop CellProfiler from kasmVNC containers

CellProfiler has persistent build issues with scikit-learn and other
dependencies. Removing from this PR to focus on QuPath and napari.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

Author: FloWuenne

.github/workflows/docker-pr.yml

@@ -36,8 +36,6 @@ jobs:
               - 'kasmVNC/napari/**'
             qupath:
               - 'kasmVNC/qupath/**'
-            cellprofiler:
-              - 'kasmVNC/cellprofiler/**'
 
       - name: Set matrix
         id: set-matrix
@@ -64,9 +62,6 @@ jobs:
           if [[ "${{ steps.changes.outputs.qupath }}" == "true" ]]; then
             CONTAINERS=$(echo "$CONTAINERS" | jq -c '. + [{"name":"qupath","path":"./kasmVNC/qupath"}]')
           fi
-          if [[ "${{ steps.changes.outputs.cellprofiler }}" == "true" ]]; then
-            CONTAINERS=$(echo "$CONTAINERS" | jq -c '. + [{"name":"cellprofiler","path":"./kasmVNC/cellprofiler"}]')
-          fi
           echo "matrix={\"container\":$CONTAINERS}" >> "$GITHUB_OUTPUT"
 
   build:

.github/workflows/docker-release.yml

@@ -15,7 +15,6 @@ on:
           - marimo
           - napari
           - qupath
-          - cellprofiler
       version:
         description: 'Version to release (e.g., 1.0.0)'
         required: true
@@ -52,7 +51,6 @@ jobs:
             marimo) echo "path=./marimo" >> "$GITHUB_OUTPUT" ;;
             napari) echo "path=./kasmVNC/napari" >> "$GITHUB_OUTPUT" ;;
             qupath) echo "path=./kasmVNC/qupath" >> "$GITHUB_OUTPUT" ;;
-            cellprofiler) echo "path=./kasmVNC/cellprofiler" >> "$GITHUB_OUTPUT" ;;
           esac
 
       - name: Log in to the Container registry

kasmVNC/README.md

@@ -8,7 +8,6 @@ This folder contains custom container images for running GUI desktop application
 |-------------|-------------|----------|
 | [QuPath](./qupath/) | Bioimage analysis for pathology | x86_64 only |
 | [napari](./napari/) | Python-based multi-dimensional image viewer | x86_64, arm64 |
-| [CellProfiler](./cellprofiler/) | Cell image analysis software | x86_64 only |
 
 ## Common Architecture
 
@@ -20,7 +19,7 @@ All KasmVNC images share the same architecture:
 │  (Ubuntu Jammy + KasmVNC server)            │
 ├─────────────────────────────────────────────┤
 │  Application Layer                          │
-│  (QuPath / napari / CellProfiler)           │
+│  (QuPath / napari)                          │
 ├─────────────────────────────────────────────┤
 │  Seqera Studios Integration                 │
 │  (connect-client + Fusion filesystem)       │
@@ -53,9 +52,6 @@ cd qupath && docker build --platform=linux/amd64 --build-arg CONNECT_CLIENT_VERS
 
 # napari
 cd napari && docker build --platform=linux/amd64 --build-arg CONNECT_CLIENT_VERSION=0.9 -t kasmvnc-napari .
-
-# CellProfiler
-cd cellprofiler && docker build --platform=linux/amd64 --build-arg CONNECT_CLIENT_VERSION=0.9 -t kasmvnc-cellprofiler .
 ```
 
 ## Local Testing