Update default Nextflow version to 26.04 #248
Workflow file for this run
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| name: nf-slack CI | |
| on: | |
| push: | |
| branches: | |
| - "*" | |
| tags-ignore: | |
| - "*" | |
| pull_request: | |
| branches: | |
| - "*" | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| name: Run unit tests | |
| if: "!contains(github.event.head_commit.message, '[ci skip]')" | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| java_version: [17, 21] | |
| nextflow_version: ["25.10", "26.04"] | |
| steps: | |
| - name: Environment | |
| run: env | sort | |
| - name: Checkout | |
| uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4 | |
| with: | |
| fetch-depth: 1 | |
| submodules: true | |
| - name: Setup Java ${{ matrix.java_version }} | |
| uses: actions/setup-java@c1e323688fd81a25caa38c78aa6df2d33d3e20d9 # v4 | |
| with: | |
| java-version: ${{matrix.java_version}} | |
| architecture: x64 | |
| distribution: "temurin" | |
| - name: Setup Nextflow ${{ matrix.nextflow_version }} | |
| uses: nf-core/setup-nextflow@6c2e22b4d901f0c42ca66c5069f8026df026d165 # v2 | |
| with: | |
| version: "${{ matrix.nextflow_version }}" | |
| - name: Setup Python | |
| uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5 | |
| with: | |
| python-version: "3.x" | |
| - name: Install pre-commit | |
| run: pip install pre-commit | |
| - name: Run pre-commit hooks | |
| run: pre-commit run --all-files --show-diff-on-failure | |
| - name: Run unit tests | |
| run: make test | |
| env: | |
| GRADLE_OPTS: "-Dorg.gradle.daemon=false" | |
| - name: Install plugin | |
| run: make install | |
| outputs: | |
| test-status: ${{ job.status }} |