Merge branch 'gh/feat/upload-refresh-token' into gh/feat/upload-parallel-chunks

Author: georgi-seqera

.github/workflows/build.yml

@@ -26,12 +26,12 @@ jobs:
         run: env | sort
 
       - name: Checkout
-        uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4.3.1
+        uses: actions/checkout@11d5960a326750d5838078e36cf38b85af677262 # v4.4.0
 
       - name: Setup Graalvm
         uses: graalvm/setup-graalvm@60c26726de13f8b90771df4bc1641a52a3159994 # v1.5.2
         with:
-          java-version: '21'
+          java-version: '25'
           distribution: 'graalvm'
           native-image-musl: 'true'
           github-token: ${{ secrets.GITHUB_TOKEN }}
@@ -87,20 +87,20 @@ jobs:
 
   mac-image:
     name: MAC
-    runs-on: macos-15-intel
+    runs-on: macos-26-intel
     timeout-minutes: 90
 
     steps:
       - name: Environment
         run: env | sort
 
       - name: Checkout
-        uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4.3.1
+        uses: actions/checkout@11d5960a326750d5838078e36cf38b85af677262 # v4.4.0
 
       - name: Setup Graalvm
         uses: graalvm/setup-graalvm@60c26726de13f8b90771df4bc1641a52a3159994 # v1.5.2
         with:
-          java-version: '21'
+          java-version: '25'
           distribution: 'graalvm'
           github-token: ${{ secrets.GITHUB_TOKEN }}
 
@@ -173,21 +173,21 @@ jobs:
 
   mac-arm64-image:
     name: MAC-arm64
-    runs-on: macos-15
+    runs-on: macos-26
     timeout-minutes: 90
 
     steps:
       - name: Environment
         run: env | sort
 
       - name: Checkout
-        uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4.3.1
+        uses: actions/checkout@11d5960a326750d5838078e36cf38b85af677262 # v4.4.0
 
       - name: Setup Graalvm
         uses: graalvm/setup-graalvm@60c26726de13f8b90771df4bc1641a52a3159994 # v1.5.2
         with:
           version: 'latest'
-          java-version: '21'
+          java-version: '25'
           distribution: 'graalvm'
           github-token: ${{ secrets.GITHUB_TOKEN }}
 
@@ -275,12 +275,12 @@ jobs:
         run: env | sort
 
       - name: Checkout
-        uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4.3.1
+        uses: actions/checkout@11d5960a326750d5838078e36cf38b85af677262 # v4.4.0
 
       - name: Setup Graalvm
         uses: graalvm/setup-graalvm@60c26726de13f8b90771df4bc1641a52a3159994 # v1.5.2
         with:
-          java-version: '21'
+          java-version: '25'
           distribution: 'graalvm'
           github-token: ${{ secrets.GITHUB_TOKEN }}
 
@@ -342,18 +342,18 @@ jobs:
       actions: read
     steps:
       - name: Checkout repository
-        uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4.3.1
+        uses: actions/checkout@11d5960a326750d5838078e36cf38b85af677262 # v4.4.0
         with:
           fetch-depth: 0
 
       - name: Download all build artifacts
         uses: actions/download-artifact@d3f86a106a0bac45b974a628896c90dbdf5c8093 # v4.3.0
 
       - name: Setup Java for JReleaser
-        uses: actions/setup-java@c1e323688fd81a25caa38c78aa6df2d33d3e20d9 # v4.8.0
+        uses: actions/setup-java@cf277c60eb25467037889841efdb72551f06f6c3 # v4.9.1
         with:
-          java-version: '21'
-          distribution: 'adopt'
+          java-version: '25'
+          distribution: 'corretto'
 
       - name: Version
         id: version
@@ -379,7 +379,7 @@ jobs:
             out/jreleaser/output.properties
             
       - name: Send message to slack
-        uses: archive/github-actions-slack@9ccf59ff2579a8d72da350ef248629f2946ba6b2 # v2.6.0
+        uses: archive/github-actions-slack@b1d27920d1b9cbacbfe6732572d325baf93ae402 # v2.11.0
         id: send-message
         continue-on-error: true
         with:

.github/workflows/lint-markdown.yml

@@ -8,7 +8,7 @@ jobs:
       actions: read
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@ee0669bd1cc54295c223e0bb666b733df41de1c5 # v2.7.0
+      - uses: actions/checkout@0717577d45739eb3c851188b29f50ed6c0b2194e # v2.8.0
 
       - uses: actions/setup-node@7c12f8017d5436eb855f1ed4399f037a36fbd9e8 # v2.5.2
 

.github/workflows/rich-codex-screenshot.yml

@@ -9,7 +9,7 @@ jobs:
     steps:
 
       - name: Check out the repo
-        uses: actions/checkout@f43a0e5ff2bd294095638e18286ca9a3d1956744 # v3.6.0
+        uses: actions/checkout@a37ce9120846195fa4ece8f58b268e6043cb2f26 # v3.7.0
 
       - name: Install latest version of Tower-CLI 
         run: |
@@ -20,7 +20,7 @@ jobs:
         
 
       - name: Generate terminal images with rich-codex
-        uses: ewels/rich-codex@80de9de011c994f32274bb4cffee140567621d8e # v1.2.11
+        uses: ewels/rich-codex@74d8432695de542da2f2acdbc5681cdf306791ec # v1.3.0
         env:
           TOWER_ACCESS_TOKEN: ${{ secrets.TOWER_ACCESS_TOKEN }}
         with:

.github/workflows/security-submit-dependencies.yml

@@ -11,10 +11,10 @@ jobs:
   dependency-submission:
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4.3.1
+    - uses: actions/checkout@11d5960a326750d5838078e36cf38b85af677262 # v4.4.0
     - uses: graalvm/setup-graalvm@60c26726de13f8b90771df4bc1641a52a3159994 # v1.5.2
       with:
-        java-version: '21'
+        java-version: '25'
         distribution: 'graalvm'
         components: 'native-image'
         native-image-musl: 'true'

VERSION-API

@@ -1,4 +1,4 @@
-1.189.0
+1.198.0
 // Only first line of this file is read
 // This version should be bumped to the minimum version where dependent API changes were introduced
 // But never higher then the current Platform API Version deployed in Cloud Production: https://cloud.seqera.io/api/service-info

build.gradle

@@ -98,7 +98,7 @@ application {
 
 java {
     toolchain {
-        languageVersion = JavaLanguageVersion.of(21)
+        languageVersion = JavaLanguageVersion.of(25)
     }
 }
 
@@ -120,7 +120,7 @@ graalvmNative {
             buildArgs.add('-H:+ReportExceptionStackTraces')
 
             javaLauncher = javaToolchains.launcherFor {
-                languageVersion = JavaLanguageVersion.of(21)
+                languageVersion = JavaLanguageVersion.of(25)
                 vendor = JvmVendorSpec.matching("Oracle Corporation")
             }
 
@@ -155,7 +155,7 @@ tasks.register('buildInfo') {
 }
 
 tasks.named('compileJava') {
-    options.release = 21
+    options.release = 25
     options.compilerArgs += ["-Aproject=${project.name}"]
     dependsOn tasks.named('buildInfo')
 }

gradle/wrapper/gradle-wrapper.jar

@@ -1,7 +1,9 @@
 distributionBase=GRADLE_USER_HOME
 distributionPath=wrapper/dists
-distributionUrl=https\://services.gradle.org/distributions/gradle-9.3.1-bin.zip
+distributionUrl=https\://services.gradle.org/distributions/gradle-9.6.1-bin.zip
 networkTimeout=10000
+retries=0
+retryBackOffMs=500
 validateDistributionUrl=true
 zipStoreBase=GRADLE_USER_HOME
 zipStorePath=wrapper/dists