gene_fontszie -> gene_fontsize

Author: LMH0066

README.rst

@@ -11,7 +11,7 @@ trackc's key applications
 --------------------------
 - Mark the abnormal interaction formed by the structural variation of the genome.
 - Show the 3Dgenome interaction and multi-omics data after rearrangement.
-- Flexible and convenient layout for multi-track 
+- Flexible and convenient layout for multi-track
 
 Available track types
 ---------------------
@@ -48,7 +48,7 @@ Available track types
    * - bedgraph matrix
      - bdgmat_track
      - support multi-regions and reverse regions,
-       styles [heatmap, line] 
+       styles [heatmap, line]
    * - zoomin visualization
      - zoomin
      - support multi-regions and reverse regions
@@ -153,7 +153,7 @@ trackc support both api and cli. Here is a cli example:
             - 18:47400000-48280000
             - 18:75280000-74030000
           line: 12
-          gene_fontszie: 8
+          gene_fontsize: 8
 
 
 Documentation

docs/cli/4C.yaml

@@ -20,8 +20,8 @@ trackc:
     track_para:
       bed12: /Users/yuanzan/Documents/github/seqyuan/trackc_data/tutorials/4C/GRCh38.gene.chr8chr14.bed12
       line: 3
-      gene_fontszie: 10
-      show_label: 
+      gene_fontsize: 10
+      show_label:
         - MYC
   - ax: t3
     height: 0.7
@@ -50,10 +50,3 @@ trackc:
       scale_adjust: Mb
       intervals: 1
       tick_fontsize: 8
-
-      
-
-
-
-
-

docs/cli/cli-4C.ipynb

@@ -41,7 +41,7 @@
     "    track_para:\n",
     "      bed12: ./github/seqyuan/trackc_data/tutorials/4C/GRCh38.gene.chr8chr14.bed12\n",
     "      line: 3\n",
-    "      gene_fontszie: 10\n",
+    "      gene_fontsize: 10\n",
     "      show_label: \n",
     "        - MYC\n",
     "  - ax: t3\n",
@@ -288,7 +288,7 @@
     "    bed12=gene_bed12,\n",
     "    regions=regions,\n",
     "    line=3,\n",
-    "    gene_fontszie=10,\n",
+    "    gene_fontsize=10,\n",
     "    show_label=[\"MYC\"],\n",
     ")\n",
     "tc.pl.bw_track(\n",

docs/cli/ectopic_interactions-1.ipynb

@@ -156,7 +156,7 @@
     "        - 18:47400000-48280000\n",
     "        - 18:75280000-74030000\n",
     "      line: 12\n",
-    "      gene_fontszie: 8\n",
+    "      gene_fontsize: 8\n",
     "```\n",
     "\n",
     "\n",

docs/cli/ectopic_interactions-2.ipynb

@@ -72,7 +72,7 @@
     "        - 18:47400000-48280000\n",
     "        - 18:75280000-74030000\n",
     "      line: 12\n",
-    "      gene_fontszie: 8\n",
+    "      gene_fontsize: 8\n",
     "\n",
     "```\n",
     "\n",

docs/cli/ectopic_interactions.ipynb

@@ -156,7 +156,7 @@
     "        - 18:47400000-48280000\n",
     "        - 18:75280000-74030000\n",
     "      line: 12\n",
-    "      gene_fontszie: 8\n",
+    "      gene_fontsize: 8\n",
     "```\n",
     "\n",
     "```shell\n",
@@ -231,7 +231,7 @@
     "        - 18:47400000-48280000\n",
     "        - 18:75280000-74030000\n",
     "      line: 12\n",
-    "      gene_fontszie: 8\n",
+    "      gene_fontsize: 8\n",
     "\n",
     "```\n",
     "\n",

docs/cli/rearrangement.yaml

@@ -20,8 +20,8 @@ trackc:
     track_para:
       bed12: /Users/yuanzan/Documents/github/seqyuan/trackc_data/tutorials/4C/GRCh38.gene.chr8chr14.bed12
       line: 3
-      gene_fontszie: 10
-      show_label: 
+      gene_fontsize: 10
+      show_label:
         - MYC
   - ax: t3
     height: 0.7
@@ -50,10 +50,3 @@ trackc:
       scale_adjust: Mb
       intervals: 1
       tick_fontsize: 8
-
-      
-
-
-
-
-

docs/gallery/bw_track_tutorial.ipynb

@@ -597,7 +597,7 @@
     "    regions=[\"chr2:20800000-21600000\", \"chr2:21600000-20800000\"],\n",
     "    track_type=\"gene\",\n",
     "    line=6,\n",
-    "    gene_fontszie=12,\n",
+    "    gene_fontsize=12,\n",
     "    ylabel=None,\n",
     ")"
    ]
@@ -648,7 +648,7 @@
     "    regions=[\"chr1:31000000-30000000\"],\n",
     "    track_type=\"gene\",\n",
     "    line=1,\n",
-    "    gene_fontszie=12,\n",
+    "    gene_fontsize=12,\n",
     "    ylabel=None,\n",
     ")"
    ]

docs/gallery/rearranged_interactions.ipynb

@@ -637,7 +637,7 @@
     ")\n",
     "\n",
     "tc.pl.gene_track(\n",
-    "    ax=axs[8], bed12=gene_bed12, regions=zoom_regions, line=12, gene_fontszie=10\n",
+    "    ax=axs[8], bed12=gene_bed12, regions=zoom_regions, line=12, gene_fontsize=10\n",
     ")"
    ]
   },
@@ -788,7 +788,7 @@
     "    regions=zoom_regions,\n",
     "    track_type=\"gene\",\n",
     "    line=12,\n",
-    "    gene_fontszie=10,\n",
+    "    gene_fontsize=10,\n",
     ")\n",
     "\n",
     "# tc.savefig('trackc_rearrange-f.pdf')"

docs/track_types/Virtual4C.ipynb

@@ -225,7 +225,7 @@
     "    bed12=gene_bed12,\n",
     "    regions=regions,\n",
     "    line=3,\n",
-    "    gene_fontszie=10,\n",
+    "    gene_fontsize=10,\n",
     "    show_label=[\"MYC\"],\n",
     ")\n",
     "tc.pl.bw_track(\n",